Hb_003929_110

Information

Type -
Description -
Location Contig3929: 68453-72509
Sequence    

Annotation

kegg
ID rcu:RCOM_1003770
description guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative (EC:3.1.7.2)
nr
ID XP_012084201.1
description PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q84R11
description Probable GTP diphosphokinase CRSH, chloroplastic OS=Arabidopsis thaliana GN=CRSH PE=2 SV=1
trembl
ID A0A067K6W1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19090 PE=4 SV=1
Gene Ontology
ID GO:0009507
description probable gtp diphosphokinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39351: 68570-68730 , PASA_asmbl_39352: 68758-72478
cDNA
(Sanger)
(ID:Location)		 007_M07.ab1: 71070-72478 , 047_J02r.ab1: 73330-76020

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_110 0.0 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_021443_040 0.0558189237 - - acc synthase, putative [Ricinus communis]
3 Hb_001123_260 0.0866652846 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
4 Hb_002849_100 0.0886439171 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
5 Hb_000679_020 0.0930632837 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
6 Hb_000027_190 0.0931884885 - - PREDICTED: uncharacterized protein LOC105642057 isoform X1 [Jatropha curcas]
7 Hb_000044_040 0.0934369 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
8 Hb_000665_160 0.0949992477 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
9 Hb_003794_010 0.0955384855 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
10 Hb_011129_040 0.0962395382 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
11 Hb_035755_010 0.097730407 - - unknown [Populus trichocarpa]
12 Hb_188063_020 0.0990611064 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007645_100 0.0996693566 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
14 Hb_003939_050 0.100271027 - - protein with unknown function [Ricinus communis]
15 Hb_001671_010 0.1008305495 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
16 Hb_005489_020 0.1009513027 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005054_230 0.100951441 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
18 Hb_007441_130 0.1014080585 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000343_250 0.1026032877 - - PREDICTED: protein CASC3 [Jatropha curcas]
20 Hb_002217_250 0.1029029973 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003929_110 Hb_003929_110 Hb_021443_040 Hb_021443_040 Hb_003929_110--Hb_021443_040 Hb_001123_260 Hb_001123_260 Hb_003929_110--Hb_001123_260 Hb_002849_100 Hb_002849_100 Hb_003929_110--Hb_002849_100 Hb_000679_020 Hb_000679_020 Hb_003929_110--Hb_000679_020 Hb_000027_190 Hb_000027_190 Hb_003929_110--Hb_000027_190 Hb_000044_040 Hb_000044_040 Hb_003929_110--Hb_000044_040 Hb_005489_020 Hb_005489_020 Hb_021443_040--Hb_005489_020 Hb_001004_060 Hb_001004_060 Hb_021443_040--Hb_001004_060 Hb_021443_040--Hb_001123_260 Hb_000329_370 Hb_000329_370 Hb_021443_040--Hb_000329_370 Hb_000343_250 Hb_000343_250 Hb_021443_040--Hb_000343_250 Hb_005779_080 Hb_005779_080 Hb_001123_260--Hb_005779_080 Hb_001123_260--Hb_005489_020 Hb_006816_430 Hb_006816_430 Hb_001123_260--Hb_006816_430 Hb_007943_110 Hb_007943_110 Hb_001123_260--Hb_007943_110 Hb_004097_070 Hb_004097_070 Hb_001123_260--Hb_004097_070 Hb_188063_020 Hb_188063_020 Hb_002849_100--Hb_188063_020 Hb_010710_070 Hb_010710_070 Hb_002849_100--Hb_010710_070 Hb_004963_030 Hb_004963_030 Hb_002849_100--Hb_004963_030 Hb_004225_050 Hb_004225_050 Hb_002849_100--Hb_004225_050 Hb_002849_100--Hb_000343_250 Hb_002496_010 Hb_002496_010 Hb_002849_100--Hb_002496_010 Hb_000864_030 Hb_000864_030 Hb_000679_020--Hb_000864_030 Hb_000661_030 Hb_000661_030 Hb_000679_020--Hb_000661_030 Hb_000174_170 Hb_000174_170 Hb_000679_020--Hb_000174_170 Hb_000563_420 Hb_000563_420 Hb_000679_020--Hb_000563_420 Hb_004920_090 Hb_004920_090 Hb_000679_020--Hb_004920_090 Hb_000906_100 Hb_000906_100 Hb_000679_020--Hb_000906_100 Hb_000027_190--Hb_000661_030 Hb_000027_190--Hb_000679_020 Hb_001435_030 Hb_001435_030 Hb_000027_190--Hb_001435_030 Hb_000005_190 Hb_000005_190 Hb_000027_190--Hb_000005_190 Hb_000027_190--Hb_010710_070 Hb_007441_130 Hb_007441_130 Hb_000027_190--Hb_007441_130 Hb_000134_270 Hb_000134_270 Hb_000044_040--Hb_000134_270 Hb_000044_040--Hb_007441_130 Hb_001268_280 Hb_001268_280 Hb_000044_040--Hb_001268_280 Hb_000044_040--Hb_021443_040 Hb_001500_050 Hb_001500_050 Hb_000044_040--Hb_001500_050 Hb_000044_040--Hb_004097_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.9976 26.2263 23.6527 18.0232 35.3372 27.3764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.4008 17.8265 25.5093 24.2346 47.5261

CAGE analysis