Hb_001123_260

Information

Type -
Description -
Location Contig1123: 227586-228554
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13200g
description POPTRDRAFT_750959; hypothetical protein
nr
ID XP_012088737.1
description PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
swissprot
ID Q24009
description Protein bicaudal C OS=Drosophila melanogaster GN=BicC PE=1 SV=2
trembl
ID A0A067JKF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23111 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat and sam domain-containing protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 026_E01.ab1: 227676-228280 , 043_L22.ab1: 227532-228280

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_260 0.0 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
2 Hb_005779_080 0.0652891961 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
3 Hb_005489_020 0.0684875643 - - conserved hypothetical protein [Ricinus communis]
4 Hb_021443_040 0.0689458661 - - acc synthase, putative [Ricinus communis]
5 Hb_006816_430 0.0759120835 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
6 Hb_007943_110 0.0776187833 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
7 Hb_004097_070 0.0833812125 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
8 Hb_000200_380 0.083834592 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
9 Hb_000343_250 0.0839331544 - - PREDICTED: protein CASC3 [Jatropha curcas]
10 Hb_000346_060 0.0849823503 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
11 Hb_000317_050 0.0853053026 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
12 Hb_007657_010 0.0863188762 - - ATP binding protein, putative [Ricinus communis]
13 Hb_003929_110 0.0866652846 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_008221_180 0.0872334743 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
15 Hb_007590_020 0.0874464794 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
16 Hb_000834_200 0.0874508135 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
17 Hb_001227_030 0.0884717789 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
18 Hb_035755_010 0.0891284505 - - unknown [Populus trichocarpa]
19 Hb_002780_020 0.0905091215 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Jatropha curcas]
20 Hb_000329_370 0.0910179462 - - hypothetical protein JCGZ_14571 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_260 Hb_001123_260 Hb_005779_080 Hb_005779_080 Hb_001123_260--Hb_005779_080 Hb_005489_020 Hb_005489_020 Hb_001123_260--Hb_005489_020 Hb_021443_040 Hb_021443_040 Hb_001123_260--Hb_021443_040 Hb_006816_430 Hb_006816_430 Hb_001123_260--Hb_006816_430 Hb_007943_110 Hb_007943_110 Hb_001123_260--Hb_007943_110 Hb_004097_070 Hb_004097_070 Hb_001123_260--Hb_004097_070 Hb_005779_080--Hb_005489_020 Hb_000029_050 Hb_000029_050 Hb_005779_080--Hb_000029_050 Hb_000291_050 Hb_000291_050 Hb_005779_080--Hb_000291_050 Hb_001227_030 Hb_001227_030 Hb_005779_080--Hb_001227_030 Hb_005993_050 Hb_005993_050 Hb_005779_080--Hb_005993_050 Hb_000329_370 Hb_000329_370 Hb_005489_020--Hb_000329_370 Hb_005489_020--Hb_001227_030 Hb_005489_020--Hb_021443_040 Hb_002890_290 Hb_002890_290 Hb_005489_020--Hb_002890_290 Hb_003929_280 Hb_003929_280 Hb_005489_020--Hb_003929_280 Hb_003929_110 Hb_003929_110 Hb_021443_040--Hb_003929_110 Hb_001004_060 Hb_001004_060 Hb_021443_040--Hb_001004_060 Hb_021443_040--Hb_000329_370 Hb_000343_250 Hb_000343_250 Hb_021443_040--Hb_000343_250 Hb_004108_100 Hb_004108_100 Hb_006816_430--Hb_004108_100 Hb_003203_030 Hb_003203_030 Hb_006816_430--Hb_003203_030 Hb_000265_230 Hb_000265_230 Hb_006816_430--Hb_000265_230 Hb_027346_010 Hb_027346_010 Hb_006816_430--Hb_027346_010 Hb_004117_140 Hb_004117_140 Hb_006816_430--Hb_004117_140 Hb_014361_070 Hb_014361_070 Hb_007943_110--Hb_014361_070 Hb_000060_090 Hb_000060_090 Hb_007943_110--Hb_000060_090 Hb_003371_110 Hb_003371_110 Hb_007943_110--Hb_003371_110 Hb_006882_020 Hb_006882_020 Hb_007943_110--Hb_006882_020 Hb_003029_110 Hb_003029_110 Hb_007943_110--Hb_003029_110 Hb_006909_070 Hb_006909_070 Hb_007943_110--Hb_006909_070 Hb_001789_190 Hb_001789_190 Hb_004097_070--Hb_001789_190 Hb_000200_380 Hb_000200_380 Hb_004097_070--Hb_000200_380 Hb_007657_010 Hb_007657_010 Hb_004097_070--Hb_007657_010 Hb_000346_060 Hb_000346_060 Hb_004097_070--Hb_000346_060 Hb_019280_030 Hb_019280_030 Hb_004097_070--Hb_019280_030 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58239 7.83976 5.28512 4.74957 7.85497 8.30231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.69585 5.96966 4.26404 4.47142 10.0689

CAGE analysis