Hb_000265_230

Information

Type transcription factor
Description TF Family: HB
Location Contig265: 253139-268174
Sequence    

Annotation

kegg
ID rcu:RCOM_1211540
description hypothetical protein
nr
ID XP_012084167.1
description PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SF03
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1211540 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeodomain-like transcriptional regulator isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27711: 258731-259381 , PASA_asmbl_27712: 259641-261392 , PASA_asmbl_27713: 265184-265475 , PASA_asmbl_27714: 265682-266755 , PASA_asmbl_27715: 265696-266755 , PASA_asmbl_27716: 266880-267474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000265_230 0.0 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
2 Hb_000788_070 0.069138093 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
3 Hb_018118_010 0.0696325334 - - DNA polymerase I, putative [Ricinus communis]
4 Hb_006816_430 0.0736752952 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
5 Hb_001191_120 0.0746162939 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
6 Hb_000025_710 0.0780382698 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
7 Hb_003203_030 0.0785514812 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
8 Hb_000753_200 0.0795873424 - - PREDICTED: putative ATP-dependent helicase hrq1 [Jatropha curcas]
9 Hb_006295_020 0.0802990437 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
10 Hb_000083_070 0.0837708104 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
11 Hb_002350_010 0.0882729667 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
12 Hb_002174_030 0.0888878905 - - transcription elongation factor s-II, putative [Ricinus communis]
13 Hb_005496_110 0.0895357666 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
14 Hb_001862_180 0.0918066436 - - PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Jatropha curcas]
15 Hb_000329_370 0.0922751282 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
16 Hb_005348_010 0.0923520119 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002784_010 0.0924324123 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
18 Hb_000041_090 0.0932645334 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
19 Hb_000914_120 0.0936915257 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
20 Hb_002784_110 0.0939751074 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]

Gene co-expression network

sample Hb_000265_230 Hb_000265_230 Hb_000788_070 Hb_000788_070 Hb_000265_230--Hb_000788_070 Hb_018118_010 Hb_018118_010 Hb_000265_230--Hb_018118_010 Hb_006816_430 Hb_006816_430 Hb_000265_230--Hb_006816_430 Hb_001191_120 Hb_001191_120 Hb_000265_230--Hb_001191_120 Hb_000025_710 Hb_000025_710 Hb_000265_230--Hb_000025_710 Hb_003203_030 Hb_003203_030 Hb_000265_230--Hb_003203_030 Hb_002784_110 Hb_002784_110 Hb_000788_070--Hb_002784_110 Hb_005496_110 Hb_005496_110 Hb_000788_070--Hb_005496_110 Hb_000788_070--Hb_000025_710 Hb_000183_020 Hb_000183_020 Hb_000788_070--Hb_000183_020 Hb_028487_010 Hb_028487_010 Hb_000788_070--Hb_028487_010 Hb_000331_560 Hb_000331_560 Hb_018118_010--Hb_000331_560 Hb_018118_010--Hb_003203_030 Hb_009252_040 Hb_009252_040 Hb_018118_010--Hb_009252_040 Hb_000679_020 Hb_000679_020 Hb_018118_010--Hb_000679_020 Hb_004003_040 Hb_004003_040 Hb_018118_010--Hb_004003_040 Hb_004108_100 Hb_004108_100 Hb_006816_430--Hb_004108_100 Hb_006816_430--Hb_003203_030 Hb_001123_260 Hb_001123_260 Hb_006816_430--Hb_001123_260 Hb_027346_010 Hb_027346_010 Hb_006816_430--Hb_027346_010 Hb_004117_140 Hb_004117_140 Hb_006816_430--Hb_004117_140 Hb_000671_070 Hb_000671_070 Hb_001191_120--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_001191_120--Hb_000025_320 Hb_002350_010 Hb_002350_010 Hb_001191_120--Hb_002350_010 Hb_001191_120--Hb_000025_710 Hb_000243_210 Hb_000243_210 Hb_001191_120--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_001191_120--Hb_000914_120 Hb_188063_010 Hb_188063_010 Hb_000025_710--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_003203_030--Hb_000331_560 Hb_005348_010 Hb_005348_010 Hb_003203_030--Hb_005348_010 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7508 7.32067 3.97885 2.27907 5.42678 7.19963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.67573 3.54721 3.58704 5.7978 8.52496

CAGE analysis