Hb_048141_020

Information

Type -
Description -
Location Contig48141: 17850-22410
Sequence    

Annotation

kegg
ID rcu:RCOM_0158910
description pentatricopeptide repeat-containing protein, putative
nr
ID AIU48559.1
description tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
swissprot
ID Q9LYT2
description Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
trembl
ID A0A097PKM5
description Tetratricopeptide repeat-like superfamily protein (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0006098
description pentatricopeptide repeat-containing protein at3g59040

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44755: 17882-45063 , PASA_asmbl_44756: 20468-20796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048141_020 0.0 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
2 Hb_000816_100 0.0752854347 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_023278_010 0.0756490352 - - Chaperone protein DnaJ [Glycine soja]
4 Hb_005470_020 0.0895028958 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
5 Hb_000015_100 0.1003684141 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_001489_050 0.1028061939 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
7 Hb_011931_060 0.1052303904 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
8 Hb_000948_170 0.1079223104 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
9 Hb_000076_130 0.1154932954 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
10 Hb_000033_110 0.1167790434 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
11 Hb_000084_280 0.1175361383 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
12 Hb_000057_050 0.1194535218 - - hypothetical protein Csa_7G132920 [Cucumis sativus]
13 Hb_000679_020 0.1198619747 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
14 Hb_000181_240 0.121268811 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
15 Hb_000661_030 0.122098904 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
16 Hb_000300_120 0.1235163838 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
17 Hb_041290_010 0.1238826535 - - thioredoxin family protein [Populus trichocarpa]
18 Hb_001089_060 0.1247448987 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X1 [Jatropha curcas]
19 Hb_003058_020 0.1263234924 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
20 Hb_000010_180 0.1266347351 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_048141_020 Hb_048141_020 Hb_000816_100 Hb_000816_100 Hb_048141_020--Hb_000816_100 Hb_023278_010 Hb_023278_010 Hb_048141_020--Hb_023278_010 Hb_005470_020 Hb_005470_020 Hb_048141_020--Hb_005470_020 Hb_000015_100 Hb_000015_100 Hb_048141_020--Hb_000015_100 Hb_001489_050 Hb_001489_050 Hb_048141_020--Hb_001489_050 Hb_011931_060 Hb_011931_060 Hb_048141_020--Hb_011931_060 Hb_001089_060 Hb_001089_060 Hb_000816_100--Hb_001089_060 Hb_001259_020 Hb_001259_020 Hb_000816_100--Hb_001259_020 Hb_000816_100--Hb_023278_010 Hb_021346_030 Hb_021346_030 Hb_000816_100--Hb_021346_030 Hb_000816_100--Hb_011931_060 Hb_000076_130 Hb_000076_130 Hb_023278_010--Hb_000076_130 Hb_006915_070 Hb_006915_070 Hb_023278_010--Hb_006915_070 Hb_006445_010 Hb_006445_010 Hb_023278_010--Hb_006445_010 Hb_000544_010 Hb_000544_010 Hb_023278_010--Hb_000544_010 Hb_000084_280 Hb_000084_280 Hb_005470_020--Hb_000084_280 Hb_005470_020--Hb_000816_100 Hb_005470_020--Hb_000015_100 Hb_000948_170 Hb_000948_170 Hb_005470_020--Hb_000948_170 Hb_000300_120 Hb_000300_120 Hb_005470_020--Hb_000300_120 Hb_000015_100--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_000015_100--Hb_000627_250 Hb_000033_110 Hb_000033_110 Hb_000015_100--Hb_000033_110 Hb_031284_070 Hb_031284_070 Hb_000015_100--Hb_031284_070 Hb_000015_100--Hb_000816_100 Hb_008206_060 Hb_008206_060 Hb_000015_100--Hb_008206_060 Hb_004032_410 Hb_004032_410 Hb_001489_050--Hb_004032_410 Hb_003440_060 Hb_003440_060 Hb_001489_050--Hb_003440_060 Hb_002893_070 Hb_002893_070 Hb_001489_050--Hb_002893_070 Hb_000181_240 Hb_000181_240 Hb_001489_050--Hb_000181_240 Hb_000080_120 Hb_000080_120 Hb_001489_050--Hb_000080_120 Hb_001489_050--Hb_021346_030 Hb_000479_170 Hb_000479_170 Hb_011931_060--Hb_000479_170 Hb_002368_070 Hb_002368_070 Hb_011931_060--Hb_002368_070 Hb_000958_070 Hb_000958_070 Hb_011931_060--Hb_000958_070 Hb_000331_560 Hb_000331_560 Hb_011931_060--Hb_000331_560 Hb_011931_060--Hb_000033_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.84982 5.16189 9.4959 6.19083 18.3427 18.4217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.55249 4.89157 6.89259 7.84154 23.8836

CAGE analysis