Hb_000084_280

Information

Type -
Description -
Location Contig84: 232842-247104
Sequence    

Annotation

kegg
ID rcu:RCOM_0292970
description signal recognition particle protein, putative
nr
ID XP_012072979.1
description PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
swissprot
ID P37107
description Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
trembl
ID A0A067KZP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06763 PE=3 SV=1
Gene Ontology
ID GO:0080085
description signal recognition particle 54 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60058: 232878-247100 , PASA_asmbl_60059: 232844-247114
cDNA
(Sanger)
(ID:Location)		 051_K21r.ab1: 247626-248445

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_280 0.0 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
2 Hb_005470_020 0.0907797652 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
3 Hb_000948_170 0.1078026964 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
4 Hb_008206_060 0.1131779518 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000015_100 0.1174266219 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_048141_020 0.1175361383 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
7 Hb_000816_100 0.1222927181 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_003388_030 0.1237872879 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
9 Hb_011931_060 0.1268407129 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
10 Hb_002053_110 0.1275147134 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_031284_070 0.1276870804 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
12 Hb_143629_060 0.1285288075 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
13 Hb_067776_020 0.1309196919 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
14 Hb_003058_020 0.1324461364 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
15 Hb_048141_030 0.1363783895 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
16 Hb_004987_070 0.1384131639 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
17 Hb_007313_100 0.139388634 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
18 Hb_002027_090 0.1426138163 - - -
19 Hb_000627_250 0.1467387967 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
20 Hb_000300_120 0.1483457554 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000084_280 Hb_000084_280 Hb_005470_020 Hb_005470_020 Hb_000084_280--Hb_005470_020 Hb_000948_170 Hb_000948_170 Hb_000084_280--Hb_000948_170 Hb_008206_060 Hb_008206_060 Hb_000084_280--Hb_008206_060 Hb_000015_100 Hb_000015_100 Hb_000084_280--Hb_000015_100 Hb_048141_020 Hb_048141_020 Hb_000084_280--Hb_048141_020 Hb_000816_100 Hb_000816_100 Hb_000084_280--Hb_000816_100 Hb_005470_020--Hb_048141_020 Hb_005470_020--Hb_000816_100 Hb_005470_020--Hb_000015_100 Hb_005470_020--Hb_000948_170 Hb_000300_120 Hb_000300_120 Hb_005470_020--Hb_000300_120 Hb_000948_170--Hb_000015_100 Hb_031284_070 Hb_031284_070 Hb_000948_170--Hb_031284_070 Hb_021346_030 Hb_021346_030 Hb_000948_170--Hb_021346_030 Hb_000627_250 Hb_000627_250 Hb_000948_170--Hb_000627_250 Hb_001205_300 Hb_001205_300 Hb_000948_170--Hb_001205_300 Hb_000948_170--Hb_000816_100 Hb_008206_060--Hb_000015_100 Hb_008206_060--Hb_031284_070 Hb_010812_050 Hb_010812_050 Hb_008206_060--Hb_010812_050 Hb_000331_130 Hb_000331_130 Hb_008206_060--Hb_000331_130 Hb_000363_060 Hb_000363_060 Hb_008206_060--Hb_000363_060 Hb_000445_140 Hb_000445_140 Hb_008206_060--Hb_000445_140 Hb_000015_100--Hb_000627_250 Hb_000033_110 Hb_000033_110 Hb_000015_100--Hb_000033_110 Hb_000015_100--Hb_031284_070 Hb_000015_100--Hb_000816_100 Hb_048141_020--Hb_000816_100 Hb_023278_010 Hb_023278_010 Hb_048141_020--Hb_023278_010 Hb_048141_020--Hb_000015_100 Hb_001489_050 Hb_001489_050 Hb_048141_020--Hb_001489_050 Hb_011931_060 Hb_011931_060 Hb_048141_020--Hb_011931_060 Hb_001089_060 Hb_001089_060 Hb_000816_100--Hb_001089_060 Hb_001259_020 Hb_001259_020 Hb_000816_100--Hb_001259_020 Hb_000816_100--Hb_023278_010 Hb_000816_100--Hb_021346_030 Hb_000816_100--Hb_011931_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1757 19.9358 39.5201 16.7861 42.6984 64.1973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0151 7.71456 12.1861 14.2529 88.2931

CAGE analysis