Hb_000080_120

Information

Type -
Description -
Location Contig80: 83655-86246
Sequence    

Annotation

kegg
ID rcu:RCOM_1203980
description ATP binding protein, putative
nr
ID XP_012065236.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
swissprot
ID Q9STF9
description Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1
trembl
ID A0A067L9J9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20923 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58733: 83763-85976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
2 Hb_002163_040 0.0698685706 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002893_070 0.0751108155 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
4 Hb_000804_040 0.0796056399 - - protein with unknown function [Ricinus communis]
5 Hb_000224_160 0.0821124262 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_000076_130 0.0824459853 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
7 Hb_012022_150 0.0832366889 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
8 Hb_000665_160 0.0849408017 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
9 Hb_022693_140 0.0863114622 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
10 Hb_021346_030 0.0865985682 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
11 Hb_003440_060 0.0884204431 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
12 Hb_006117_040 0.0918849206 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
13 Hb_003029_070 0.0933618359 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001322_140 0.0955635606 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
15 Hb_001489_050 0.095718491 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
16 Hb_002639_140 0.0960234469 - - PREDICTED: 4-coumarate--CoA ligase-like 5 [Jatropha curcas]
17 Hb_000627_250 0.0960354482 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
18 Hb_002374_240 0.0968403177 - - nucellin, putative [Ricinus communis]
19 Hb_000753_240 0.0971696675 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
20 Hb_007657_010 0.097804833 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000080_120 Hb_000080_120 Hb_002163_040 Hb_002163_040 Hb_000080_120--Hb_002163_040 Hb_002893_070 Hb_002893_070 Hb_000080_120--Hb_002893_070 Hb_000804_040 Hb_000804_040 Hb_000080_120--Hb_000804_040 Hb_000224_160 Hb_000224_160 Hb_000080_120--Hb_000224_160 Hb_000076_130 Hb_000076_130 Hb_000080_120--Hb_000076_130 Hb_012022_150 Hb_012022_150 Hb_000080_120--Hb_012022_150 Hb_002163_040--Hb_012022_150 Hb_002163_040--Hb_000224_160 Hb_006117_040 Hb_006117_040 Hb_002163_040--Hb_006117_040 Hb_001584_200 Hb_001584_200 Hb_002163_040--Hb_001584_200 Hb_022693_140 Hb_022693_140 Hb_002163_040--Hb_022693_140 Hb_003440_060 Hb_003440_060 Hb_002893_070--Hb_003440_060 Hb_002893_070--Hb_022693_140 Hb_002893_070--Hb_000224_160 Hb_000723_100 Hb_000723_100 Hb_002893_070--Hb_000723_100 Hb_003939_050 Hb_003939_050 Hb_002893_070--Hb_003939_050 Hb_000205_190 Hb_000205_190 Hb_000804_040--Hb_000205_190 Hb_000804_040--Hb_022693_140 Hb_004970_190 Hb_004970_190 Hb_000804_040--Hb_004970_190 Hb_001322_140 Hb_001322_140 Hb_000804_040--Hb_001322_140 Hb_000804_040--Hb_012022_150 Hb_000753_240 Hb_000753_240 Hb_000804_040--Hb_000753_240 Hb_000224_160--Hb_001584_200 Hb_000224_160--Hb_012022_150 Hb_000224_160--Hb_022693_140 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_000184_170 Hb_000184_170 Hb_000224_160--Hb_000184_170 Hb_000665_160 Hb_000665_160 Hb_000076_130--Hb_000665_160 Hb_000544_010 Hb_000544_010 Hb_000076_130--Hb_000544_010 Hb_002909_050 Hb_002909_050 Hb_000076_130--Hb_002909_050 Hb_004994_380 Hb_004994_380 Hb_000076_130--Hb_004994_380 Hb_004963_030 Hb_004963_030 Hb_000076_130--Hb_004963_030 Hb_001141_020 Hb_001141_020 Hb_000076_130--Hb_001141_020 Hb_012022_150--Hb_022693_140 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_012022_150--Hb_000753_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.50958 3.97981 8.60514 4.3033 10.3266 9.46508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.5492 7.83024 5.98589 3.84289 13.3855

CAGE analysis