Hb_001322_140

Information

Type -
Description -
Location Contig1322: 119750-122491
Sequence    

Annotation

kegg
ID vvi:100263826
description 50S ribosomal protein L19-2, chloroplastic
nr
ID XP_012070081.1
description PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
swissprot
ID P82413
description 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2
trembl
ID A0A067L754
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09270: 119874-122474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_140 0.0 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
2 Hb_000804_040 0.0706049529 - - protein with unknown function [Ricinus communis]
3 Hb_001700_010 0.0818843223 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
4 Hb_012022_150 0.0829902642 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
5 Hb_000205_190 0.0868185327 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
6 Hb_000184_170 0.0881659482 - - hypothetical protein RCOM_1213430 [Ricinus communis]
7 Hb_000224_160 0.0897938465 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_022693_140 0.0920122227 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
9 Hb_008165_060 0.0934596287 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
10 Hb_002163_040 0.0944914533 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000080_120 0.0955635606 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
12 Hb_004970_190 0.0964846932 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_002780_020 0.0970778981 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Jatropha curcas]
14 Hb_004884_070 0.1001427987 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
15 Hb_000453_050 0.1013146652 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
16 Hb_000103_480 0.102029476 - - -
17 Hb_001975_090 0.1024309519 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
18 Hb_002639_140 0.1029908595 - - PREDICTED: 4-coumarate--CoA ligase-like 5 [Jatropha curcas]
19 Hb_001001_080 0.1030110526 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
20 Hb_000302_180 0.1038987674 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001322_140 Hb_001322_140 Hb_000804_040 Hb_000804_040 Hb_001322_140--Hb_000804_040 Hb_001700_010 Hb_001700_010 Hb_001322_140--Hb_001700_010 Hb_012022_150 Hb_012022_150 Hb_001322_140--Hb_012022_150 Hb_000205_190 Hb_000205_190 Hb_001322_140--Hb_000205_190 Hb_000184_170 Hb_000184_170 Hb_001322_140--Hb_000184_170 Hb_000224_160 Hb_000224_160 Hb_001322_140--Hb_000224_160 Hb_000804_040--Hb_000205_190 Hb_022693_140 Hb_022693_140 Hb_000804_040--Hb_022693_140 Hb_004970_190 Hb_004970_190 Hb_000804_040--Hb_004970_190 Hb_000804_040--Hb_012022_150 Hb_000753_240 Hb_000753_240 Hb_000804_040--Hb_000753_240 Hb_000103_480 Hb_000103_480 Hb_001700_010--Hb_000103_480 Hb_001700_010--Hb_000184_170 Hb_000869_020 Hb_000869_020 Hb_001700_010--Hb_000869_020 Hb_008165_060 Hb_008165_060 Hb_001700_010--Hb_008165_060 Hb_001700_010--Hb_000205_190 Hb_012022_150--Hb_022693_140 Hb_012022_150--Hb_000224_160 Hb_002163_040 Hb_002163_040 Hb_012022_150--Hb_002163_040 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_012022_150--Hb_000753_240 Hb_001158_070 Hb_001158_070 Hb_000205_190--Hb_001158_070 Hb_000205_190--Hb_004970_190 Hb_000205_190--Hb_008165_060 Hb_001001_080 Hb_001001_080 Hb_000205_190--Hb_001001_080 Hb_007007_120 Hb_007007_120 Hb_000205_190--Hb_007007_120 Hb_003153_010 Hb_003153_010 Hb_000184_170--Hb_003153_010 Hb_000346_060 Hb_000346_060 Hb_000184_170--Hb_000346_060 Hb_008959_010 Hb_008959_010 Hb_000184_170--Hb_008959_010 Hb_000184_170--Hb_022693_140 Hb_001279_030 Hb_001279_030 Hb_000184_170--Hb_001279_030 Hb_001584_200 Hb_001584_200 Hb_000224_160--Hb_001584_200 Hb_000224_160--Hb_022693_140 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_000224_160--Hb_002163_040 Hb_000224_160--Hb_000184_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.919 76.9118 173.327 63.9013 115.343 196.502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
114.955 125.902 162.474 64.5253 194.919

CAGE analysis