Hb_000103_480

Information

Type -
Description -
Location Contig103: 401360-406912
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01244: 405352-406735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_480 0.0 - - -
2 Hb_001700_010 0.0710721671 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
3 Hb_001472_060 0.091685051 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
4 Hb_004097_130 0.09291542 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
5 Hb_000103_530 0.0952702281 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
6 Hb_008165_060 0.1000327237 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
7 Hb_001322_140 0.102029476 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
8 Hb_137222_020 0.1040008092 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
9 Hb_003531_080 0.1042635213 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
10 Hb_000184_170 0.1066357182 - - hypothetical protein RCOM_1213430 [Ricinus communis]
11 Hb_000869_020 0.1090370714 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
12 Hb_000205_190 0.1105631721 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
13 Hb_004970_190 0.1148803085 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_001205_120 0.1164814534 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
15 Hb_007007_120 0.1175533865 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
16 Hb_003513_010 0.1178696287 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
17 Hb_007831_010 0.1180807779 - - PREDICTED: oligoribonuclease [Vitis vinifera]
18 Hb_021409_180 0.1188130339 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
19 Hb_005405_020 0.1194606679 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
20 Hb_001158_070 0.1195849255 - - Protein DEK, putative [Ricinus communis]

Gene co-expression network

sample Hb_000103_480 Hb_000103_480 Hb_001700_010 Hb_001700_010 Hb_000103_480--Hb_001700_010 Hb_001472_060 Hb_001472_060 Hb_000103_480--Hb_001472_060 Hb_004097_130 Hb_004097_130 Hb_000103_480--Hb_004097_130 Hb_000103_530 Hb_000103_530 Hb_000103_480--Hb_000103_530 Hb_008165_060 Hb_008165_060 Hb_000103_480--Hb_008165_060 Hb_001322_140 Hb_001322_140 Hb_000103_480--Hb_001322_140 Hb_000184_170 Hb_000184_170 Hb_001700_010--Hb_000184_170 Hb_000869_020 Hb_000869_020 Hb_001700_010--Hb_000869_020 Hb_001700_010--Hb_008165_060 Hb_001700_010--Hb_001322_140 Hb_000205_190 Hb_000205_190 Hb_001700_010--Hb_000205_190 Hb_003531_080 Hb_003531_080 Hb_001472_060--Hb_003531_080 Hb_001472_060--Hb_004097_130 Hb_021409_180 Hb_021409_180 Hb_001472_060--Hb_021409_180 Hb_000808_050 Hb_000808_050 Hb_001472_060--Hb_000808_050 Hb_001205_120 Hb_001205_120 Hb_001472_060--Hb_001205_120 Hb_000019_150 Hb_000019_150 Hb_001472_060--Hb_000019_150 Hb_004097_130--Hb_003531_080 Hb_154471_020 Hb_154471_020 Hb_004097_130--Hb_154471_020 Hb_000635_090 Hb_000635_090 Hb_004097_130--Hb_000635_090 Hb_003688_040 Hb_003688_040 Hb_004097_130--Hb_003688_040 Hb_007002_020 Hb_007002_020 Hb_000103_530--Hb_007002_020 Hb_000103_530--Hb_001700_010 Hb_000103_530--Hb_004097_130 Hb_012305_100 Hb_012305_100 Hb_000103_530--Hb_012305_100 Hb_004583_010 Hb_004583_010 Hb_000103_530--Hb_004583_010 Hb_008165_060--Hb_000205_190 Hb_001158_070 Hb_001158_070 Hb_008165_060--Hb_001158_070 Hb_000329_320 Hb_000329_320 Hb_008165_060--Hb_000329_320 Hb_000917_060 Hb_000917_060 Hb_008165_060--Hb_000917_060 Hb_005269_070 Hb_005269_070 Hb_008165_060--Hb_005269_070 Hb_000804_040 Hb_000804_040 Hb_001322_140--Hb_000804_040 Hb_012022_150 Hb_012022_150 Hb_001322_140--Hb_012022_150 Hb_001322_140--Hb_000205_190 Hb_001322_140--Hb_000184_170 Hb_000224_160 Hb_000224_160 Hb_001322_140--Hb_000224_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85261 0.950024 2.5534 1.30691 0.726047 2.30425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.56336 1.23011 2.01054 1.12116 2.16857

CAGE analysis