Hb_012305_100

Information

Type rubber biosynthesis
Description Gene Name: Dihydrolipoamide dehydrogenase
Location Contig12305: 64155-74279
Sequence    

Annotation

kegg
ID rcu:RCOM_0999900
description dihydrolipoamide dehydrogenase, putative (EC:1.8.1.4)
nr
ID XP_012084041.1
description PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
swissprot
ID A8MS68
description Dihydrolipoyl dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=LPD1 PE=2 SV=1
trembl
ID A0A067K7V0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18974 PE=3 SV=1
Gene Ontology
ID GO:0005623
description dihydrolipoyl dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07015: 67140-67269 , PASA_asmbl_07016: 67313-74295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_100 0.0 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
2 Hb_021732_010 0.0852015235 - - biotin carboxylase [Vernicia fordii]
3 Hb_156850_100 0.0962540894 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
4 Hb_001022_030 0.0980308345 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
5 Hb_005539_010 0.1024550987 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
6 Hb_003728_100 0.1056738314 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
7 Hb_000802_130 0.1062171115 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
8 Hb_000207_300 0.1069775997 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
9 Hb_000108_050 0.1073920469 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
10 Hb_000480_040 0.1078143922 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
11 Hb_005127_030 0.1109978336 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000003_780 0.1117702429 - - hexokinase [Manihot esculenta]
13 Hb_000167_110 0.1151319218 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
14 Hb_006846_070 0.1152847736 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
15 Hb_002687_120 0.1155197587 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
16 Hb_012573_050 0.1173347281 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
17 Hb_000907_180 0.1177236078 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
18 Hb_006538_120 0.1188399462 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
19 Hb_003411_090 0.1188890676 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
20 Hb_000941_100 0.1189061302 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_012305_100 Hb_012305_100 Hb_021732_010 Hb_021732_010 Hb_012305_100--Hb_021732_010 Hb_156850_100 Hb_156850_100 Hb_012305_100--Hb_156850_100 Hb_001022_030 Hb_001022_030 Hb_012305_100--Hb_001022_030 Hb_005539_010 Hb_005539_010 Hb_012305_100--Hb_005539_010 Hb_003728_100 Hb_003728_100 Hb_012305_100--Hb_003728_100 Hb_000802_130 Hb_000802_130 Hb_012305_100--Hb_000802_130 Hb_000284_130 Hb_000284_130 Hb_021732_010--Hb_000284_130 Hb_000003_780 Hb_000003_780 Hb_021732_010--Hb_000003_780 Hb_021732_010--Hb_000802_130 Hb_001541_110 Hb_001541_110 Hb_021732_010--Hb_001541_110 Hb_002027_320 Hb_002027_320 Hb_021732_010--Hb_002027_320 Hb_160271_010 Hb_160271_010 Hb_156850_100--Hb_160271_010 Hb_048093_010 Hb_048093_010 Hb_156850_100--Hb_048093_010 Hb_174865_040 Hb_174865_040 Hb_156850_100--Hb_174865_040 Hb_002631_240 Hb_002631_240 Hb_156850_100--Hb_002631_240 Hb_012573_050 Hb_012573_050 Hb_156850_100--Hb_012573_050 Hb_001882_010 Hb_001882_010 Hb_156850_100--Hb_001882_010 Hb_002874_180 Hb_002874_180 Hb_001022_030--Hb_002874_180 Hb_001022_030--Hb_156850_100 Hb_001022_030--Hb_003728_100 Hb_000539_050 Hb_000539_050 Hb_001022_030--Hb_000539_050 Hb_001022_030--Hb_005539_010 Hb_009225_020 Hb_009225_020 Hb_001022_030--Hb_009225_020 Hb_006538_120 Hb_006538_120 Hb_005539_010--Hb_006538_120 Hb_000212_440 Hb_000212_440 Hb_005539_010--Hb_000212_440 Hb_000941_100 Hb_000941_100 Hb_005539_010--Hb_000941_100 Hb_001935_100 Hb_001935_100 Hb_005539_010--Hb_001935_100 Hb_000227_170 Hb_000227_170 Hb_005539_010--Hb_000227_170 Hb_012150_030 Hb_012150_030 Hb_005539_010--Hb_012150_030 Hb_003728_100--Hb_009225_020 Hb_000207_300 Hb_000207_300 Hb_003728_100--Hb_000207_300 Hb_000221_140 Hb_000221_140 Hb_003728_100--Hb_000221_140 Hb_003462_070 Hb_003462_070 Hb_003728_100--Hb_003462_070 Hb_005405_020 Hb_005405_020 Hb_003728_100--Hb_005405_020 Hb_000613_120 Hb_000613_120 Hb_000802_130--Hb_000613_120 Hb_021650_010 Hb_021650_010 Hb_000802_130--Hb_021650_010 Hb_001430_020 Hb_001430_020 Hb_000802_130--Hb_001430_020 Hb_004109_260 Hb_004109_260 Hb_000802_130--Hb_004109_260 Hb_011861_050 Hb_011861_050 Hb_000802_130--Hb_011861_050 Hb_102948_010 Hb_102948_010 Hb_000802_130--Hb_102948_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.91381 1.55433 12.7291 6.12029 3.37673 4.60896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.26175 3.43706 5.30367 3.94573 11.9301

CAGE analysis