Hb_000284_130

Information

Type -
Description -
Location Contig284: 181316-186844
Sequence    

Annotation

kegg
ID rcu:RCOM_0759640
description sodium-bile acid cotransporter, putative
nr
ID XP_002526459.1
description sodium-bile acid cotransporter, putative [Ricinus communis]
swissprot
ID Q93YR2
description Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1
trembl
ID B9SKE0
description Sodium-bile acid cotransporter, putative OS=Ricinus communis GN=RCOM_0759640 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable sodium metabolite cotransporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29727: 181642-186914 , PASA_asmbl_29728: 181828-186908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000284_130 0.0 - - sodium-bile acid cotransporter, putative [Ricinus communis]
2 Hb_006787_090 0.0800345291 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
3 Hb_021732_010 0.0811396703 - - biotin carboxylase [Vernicia fordii]
4 Hb_004994_080 0.0812984921 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000181_060 0.0827170271 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
6 Hb_000364_100 0.0867493624 - - PREDICTED: uncharacterized protein LOC105639739 [Jatropha curcas]
7 Hb_003752_070 0.0899032169 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
8 Hb_021650_010 0.0900790288 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
9 Hb_010174_090 0.1028049736 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
10 Hb_005162_110 0.102870223 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
11 Hb_000613_120 0.105610007 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
12 Hb_000802_130 0.1063262537 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
13 Hb_005389_170 0.1082251708 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
14 Hb_000703_290 0.1087307906 - - aldo/keto reductase, putative [Ricinus communis]
15 Hb_006555_040 0.1111666069 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
16 Hb_000194_010 0.111428533 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
17 Hb_011386_050 0.1115418695 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
18 Hb_007451_040 0.1129588892 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
19 Hb_000311_120 0.1132858835 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
20 Hb_000532_100 0.1136180504 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]

Gene co-expression network

sample Hb_000284_130 Hb_000284_130 Hb_006787_090 Hb_006787_090 Hb_000284_130--Hb_006787_090 Hb_021732_010 Hb_021732_010 Hb_000284_130--Hb_021732_010 Hb_004994_080 Hb_004994_080 Hb_000284_130--Hb_004994_080 Hb_000181_060 Hb_000181_060 Hb_000284_130--Hb_000181_060 Hb_000364_100 Hb_000364_100 Hb_000284_130--Hb_000364_100 Hb_003752_070 Hb_003752_070 Hb_000284_130--Hb_003752_070 Hb_000311_120 Hb_000311_120 Hb_006787_090--Hb_000311_120 Hb_010174_090 Hb_010174_090 Hb_006787_090--Hb_010174_090 Hb_006787_090--Hb_003752_070 Hb_000613_120 Hb_000613_120 Hb_006787_090--Hb_000613_120 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_012305_100 Hb_012305_100 Hb_021732_010--Hb_012305_100 Hb_000003_780 Hb_000003_780 Hb_021732_010--Hb_000003_780 Hb_000802_130 Hb_000802_130 Hb_021732_010--Hb_000802_130 Hb_001541_110 Hb_001541_110 Hb_021732_010--Hb_001541_110 Hb_002027_320 Hb_002027_320 Hb_021732_010--Hb_002027_320 Hb_007263_010 Hb_007263_010 Hb_004994_080--Hb_007263_010 Hb_004994_080--Hb_000364_100 Hb_004994_080--Hb_000181_060 Hb_011386_050 Hb_011386_050 Hb_004994_080--Hb_011386_050 Hb_005162_110 Hb_005162_110 Hb_004994_080--Hb_005162_110 Hb_006555_040 Hb_006555_040 Hb_004994_080--Hb_006555_040 Hb_000194_010 Hb_000194_010 Hb_000181_060--Hb_000194_010 Hb_000181_060--Hb_007263_010 Hb_000181_060--Hb_002027_320 Hb_001623_490 Hb_001623_490 Hb_000181_060--Hb_001623_490 Hb_000532_100 Hb_000532_100 Hb_000364_100--Hb_000532_100 Hb_000826_030 Hb_000826_030 Hb_000364_100--Hb_000826_030 Hb_001158_160 Hb_001158_160 Hb_000364_100--Hb_001158_160 Hb_000364_100--Hb_011386_050 Hb_021650_010 Hb_021650_010 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_003752_070--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_003752_070--Hb_000051_060 Hb_003752_070--Hb_010174_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.81591 5.08825 29.364 7.3287 7.07467 6.2833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.3129 5.55788 4.36332 5.98813 19.3121

CAGE analysis