Hb_000181_060

Information

Type -
Description -
Location Contig181: 44994-47836
Sequence    

Annotation

kegg
ID rcu:RCOM_0108620
description 30S ribosomal protein S20, putative
nr
ID XP_012076334.1
description PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
swissprot
ID Q9ASV6
description 30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana GN=RPS20 PE=2 SV=1
trembl
ID A0A067LN37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15308 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17488: 31029-44538 , PASA_asmbl_17491: 44955-47884
cDNA
(Sanger)
(ID:Location)		 042_A11.ab1: 44978-47689

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_060 0.0 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
2 Hb_004994_080 0.0780088084 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000284_130 0.0827170271 - - sodium-bile acid cotransporter, putative [Ricinus communis]
4 Hb_000194_010 0.0902098654 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
5 Hb_007263_010 0.0980383818 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
6 Hb_002027_320 0.1001417762 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
7 Hb_001623_490 0.101255967 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
8 Hb_000140_440 0.1028476036 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
9 Hb_000703_290 0.1043573196 - - aldo/keto reductase, putative [Ricinus communis]
10 Hb_012779_080 0.1068224112 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
11 Hb_008375_030 0.108023302 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
12 Hb_007451_040 0.109714237 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
13 Hb_005217_030 0.1110194153 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
14 Hb_000212_250 0.1134790468 - - conserved hypothetical protein [Ricinus communis]
15 Hb_160256_010 0.1158991216 - - -
16 Hb_003752_070 0.1162138534 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
17 Hb_006787_090 0.1167439956 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
18 Hb_007217_010 0.1170223936 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
19 Hb_021650_010 0.1172157415 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
20 Hb_005665_090 0.1176013536 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_060 Hb_000181_060 Hb_004994_080 Hb_004994_080 Hb_000181_060--Hb_004994_080 Hb_000284_130 Hb_000284_130 Hb_000181_060--Hb_000284_130 Hb_000194_010 Hb_000194_010 Hb_000181_060--Hb_000194_010 Hb_007263_010 Hb_007263_010 Hb_000181_060--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000181_060--Hb_002027_320 Hb_001623_490 Hb_001623_490 Hb_000181_060--Hb_001623_490 Hb_004994_080--Hb_007263_010 Hb_000364_100 Hb_000364_100 Hb_004994_080--Hb_000364_100 Hb_011386_050 Hb_011386_050 Hb_004994_080--Hb_011386_050 Hb_005162_110 Hb_005162_110 Hb_004994_080--Hb_005162_110 Hb_006555_040 Hb_006555_040 Hb_004994_080--Hb_006555_040 Hb_006787_090 Hb_006787_090 Hb_000284_130--Hb_006787_090 Hb_021732_010 Hb_021732_010 Hb_000284_130--Hb_021732_010 Hb_000284_130--Hb_004994_080 Hb_000284_130--Hb_000364_100 Hb_003752_070 Hb_003752_070 Hb_000284_130--Hb_003752_070 Hb_000061_150 Hb_000061_150 Hb_000194_010--Hb_000061_150 Hb_001454_150 Hb_001454_150 Hb_000194_010--Hb_001454_150 Hb_000976_190 Hb_000976_190 Hb_000194_010--Hb_000976_190 Hb_011310_140 Hb_011310_140 Hb_000194_010--Hb_011310_140 Hb_012653_030 Hb_012653_030 Hb_000194_010--Hb_012653_030 Hb_007451_040 Hb_007451_040 Hb_007263_010--Hb_007451_040 Hb_007263_010--Hb_002027_320 Hb_000392_450 Hb_000392_450 Hb_007263_010--Hb_000392_450 Hb_007263_010--Hb_006555_040 Hb_007263_010--Hb_011386_050 Hb_002027_320--Hb_000392_450 Hb_002027_320--Hb_004994_080 Hb_002027_320--Hb_011386_050 Hb_011381_040 Hb_011381_040 Hb_002027_320--Hb_011381_040 Hb_012779_080 Hb_012779_080 Hb_001623_490--Hb_012779_080 Hb_000327_330 Hb_000327_330 Hb_001623_490--Hb_000327_330 Hb_005665_090 Hb_005665_090 Hb_001623_490--Hb_005665_090 Hb_002026_090 Hb_002026_090 Hb_001623_490--Hb_002026_090 Hb_002218_020 Hb_002218_020 Hb_001623_490--Hb_002218_020 Hb_016448_010 Hb_016448_010 Hb_001623_490--Hb_016448_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6639 21.2603 143.352 47.8498 24.1585 34.9205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.246 25.629 13.0733 20.6084 83.5983

CAGE analysis