Hb_000392_450

Information

Type -
Description -
Location Contig392: 365541-379096
Sequence    

Annotation

kegg
ID rcu:RCOM_1513750
description isochorismate synthase, putative (EC:5.4.4.2)
nr
ID XP_012080213.1
description PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q9M9V6
description Isochorismate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=ICS2 PE=2 SV=2
trembl
ID B9R951
description Isochorismate synthase, putative OS=Ricinus communis GN=RCOM_1513750 PE=4 SV=1
Gene Ontology
ID GO:0008909
description isochorismate synthase chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39295: 369929-370762 , PASA_asmbl_39297: 370763-371052 , PASA_asmbl_39300: 372885-373136 , PASA_asmbl_39301: 374586-375276 , PASA_asmbl_39302: 374586-375130 , PASA_asmbl_39303: 375379-376405 , PASA_asmbl_39304: 376103-376436 , PASA_asmbl_39305: 376726-379085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_450 0.0 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
2 Hb_004517_030 0.0617887328 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007263_010 0.0801205096 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
4 Hb_002027_320 0.0805999333 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
5 Hb_003874_010 0.0945044041 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
6 Hb_007217_010 0.0961886492 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
7 Hb_000212_250 0.1007628533 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000438_130 0.1108782703 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
9 Hb_001386_090 0.114708194 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
10 Hb_001301_330 0.1207303937 - - OTU-like cysteine protease family protein [Populus trichocarpa]
11 Hb_007451_040 0.1246007668 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
12 Hb_000181_060 0.1246991305 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
13 Hb_011381_040 0.1266375329 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
14 Hb_003397_030 0.1279488441 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
15 Hb_004994_080 0.1287205414 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_006555_040 0.1289672004 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
17 Hb_003835_110 0.1295942125 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
18 Hb_153553_040 0.1306008003 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
19 Hb_000300_710 0.1315033579 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
20 Hb_011386_050 0.1352214445 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000392_450 Hb_000392_450 Hb_004517_030 Hb_004517_030 Hb_000392_450--Hb_004517_030 Hb_007263_010 Hb_007263_010 Hb_000392_450--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000392_450--Hb_002027_320 Hb_003874_010 Hb_003874_010 Hb_000392_450--Hb_003874_010 Hb_007217_010 Hb_007217_010 Hb_000392_450--Hb_007217_010 Hb_000212_250 Hb_000212_250 Hb_000392_450--Hb_000212_250 Hb_004517_030--Hb_000212_250 Hb_004517_030--Hb_007217_010 Hb_001386_090 Hb_001386_090 Hb_004517_030--Hb_001386_090 Hb_003397_030 Hb_003397_030 Hb_004517_030--Hb_003397_030 Hb_004517_030--Hb_003874_010 Hb_007451_040 Hb_007451_040 Hb_007263_010--Hb_007451_040 Hb_004994_080 Hb_004994_080 Hb_007263_010--Hb_004994_080 Hb_007263_010--Hb_002027_320 Hb_006555_040 Hb_006555_040 Hb_007263_010--Hb_006555_040 Hb_011386_050 Hb_011386_050 Hb_007263_010--Hb_011386_050 Hb_002027_320--Hb_004994_080 Hb_002027_320--Hb_011386_050 Hb_011381_040 Hb_011381_040 Hb_002027_320--Hb_011381_040 Hb_000181_060 Hb_000181_060 Hb_002027_320--Hb_000181_060 Hb_003430_040 Hb_003430_040 Hb_003874_010--Hb_003430_040 Hb_003874_010--Hb_002027_320 Hb_003874_010--Hb_007263_010 Hb_000300_710 Hb_000300_710 Hb_003874_010--Hb_000300_710 Hb_007217_010--Hb_000212_250 Hb_006588_190 Hb_006588_190 Hb_007217_010--Hb_006588_190 Hb_011476_030 Hb_011476_030 Hb_007217_010--Hb_011476_030 Hb_002986_090 Hb_002986_090 Hb_007217_010--Hb_002986_090 Hb_000094_100 Hb_000094_100 Hb_007217_010--Hb_000094_100 Hb_153553_040 Hb_153553_040 Hb_000212_250--Hb_153553_040 Hb_000212_250--Hb_011476_030 Hb_005665_090 Hb_005665_090 Hb_000212_250--Hb_005665_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09709 1.89907 17.2716 4.01164 2.07481 1.46315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.91482 2.54736 1.20514 2.02542 5.64727

CAGE analysis