Hb_153553_040

Information

Type -
Description -
Location Contig153553: 58833-59975
Sequence    

Annotation

kegg
ID rcu:RCOM_0866780
description RNA exonuclease NGL1, putative (EC:3.1.13.4)
nr
ID KDP28070.1
description hypothetical protein JCGZ_19478 [Jatropha curcas]
swissprot
ID A8MS41
description Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana GN=CCR4-4 PE=2 SV=1
trembl
ID A0A067K733
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19478 PE=4 SV=1
Gene Ontology
ID GO:0004527
description carbon catabolite repressor protein 4 homolog 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153553_040 0.0 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
2 Hb_000212_250 0.0961109823 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000445_210 0.1113659952 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
4 Hb_000140_440 0.1127015512 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
5 Hb_005217_030 0.1140844367 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
6 Hb_007217_010 0.1150730255 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
7 Hb_011476_030 0.1158336261 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
8 Hb_000094_100 0.1176301993 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
9 Hb_003683_030 0.1181173419 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
10 Hb_012779_080 0.1220845801 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
11 Hb_002026_090 0.1267328231 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
12 Hb_004517_030 0.1268691597 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004837_210 0.127719969 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
14 Hb_005074_050 0.1290607536 - - PREDICTED: myosin-6-like [Jatropha curcas]
15 Hb_003106_200 0.1302158826 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
16 Hb_000392_450 0.1306008003 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
17 Hb_155025_010 0.1310049437 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_002915_010 0.1317004294 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
19 Hb_000270_600 0.1329472549 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
20 Hb_001663_130 0.1334451673 - - acyl-CoA thioesterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_153553_040 Hb_153553_040 Hb_000212_250 Hb_000212_250 Hb_153553_040--Hb_000212_250 Hb_000445_210 Hb_000445_210 Hb_153553_040--Hb_000445_210 Hb_000140_440 Hb_000140_440 Hb_153553_040--Hb_000140_440 Hb_005217_030 Hb_005217_030 Hb_153553_040--Hb_005217_030 Hb_007217_010 Hb_007217_010 Hb_153553_040--Hb_007217_010 Hb_011476_030 Hb_011476_030 Hb_153553_040--Hb_011476_030 Hb_000212_250--Hb_007217_010 Hb_004517_030 Hb_004517_030 Hb_000212_250--Hb_004517_030 Hb_000212_250--Hb_011476_030 Hb_000392_450 Hb_000392_450 Hb_000212_250--Hb_000392_450 Hb_005665_090 Hb_005665_090 Hb_000212_250--Hb_005665_090 Hb_008120_040 Hb_008120_040 Hb_000445_210--Hb_008120_040 Hb_004577_010 Hb_004577_010 Hb_000445_210--Hb_004577_010 Hb_000270_600 Hb_000270_600 Hb_000445_210--Hb_000270_600 Hb_155025_010 Hb_155025_010 Hb_000445_210--Hb_155025_010 Hb_015807_080 Hb_015807_080 Hb_000445_210--Hb_015807_080 Hb_006555_040 Hb_006555_040 Hb_000140_440--Hb_006555_040 Hb_004994_080 Hb_004994_080 Hb_000140_440--Hb_004994_080 Hb_000140_440--Hb_155025_010 Hb_007451_040 Hb_007451_040 Hb_000140_440--Hb_007451_040 Hb_002218_020 Hb_002218_020 Hb_000140_440--Hb_002218_020 Hb_000181_060 Hb_000181_060 Hb_000140_440--Hb_000181_060 Hb_001430_020 Hb_001430_020 Hb_005217_030--Hb_001430_020 Hb_005217_030--Hb_000181_060 Hb_005217_030--Hb_000140_440 Hb_000320_190 Hb_000320_190 Hb_005217_030--Hb_000320_190 Hb_005217_030--Hb_011476_030 Hb_006588_190 Hb_006588_190 Hb_007217_010--Hb_006588_190 Hb_007217_010--Hb_011476_030 Hb_002986_090 Hb_002986_090 Hb_007217_010--Hb_002986_090 Hb_007217_010--Hb_000392_450 Hb_000094_100 Hb_000094_100 Hb_007217_010--Hb_000094_100 Hb_000574_470 Hb_000574_470 Hb_011476_030--Hb_000574_470 Hb_027445_100 Hb_027445_100 Hb_011476_030--Hb_027445_100 Hb_002915_010 Hb_002915_010 Hb_011476_030--Hb_002915_010 Hb_011476_030--Hb_005665_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.0534 6.28404 24.4135 5.61228 2.24631 3.533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.01457 2.53449 2.48419 2.5857 12.5119

CAGE analysis