Hb_155025_010

Information

Type -
Description -
Location Contig155025: 4719-12253
Sequence    

Annotation

kegg
ID rcu:RCOM_0901430
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012073132.1
description PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06108 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13455: 4852-6189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155025_010 0.0 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
2 Hb_000140_440 0.0927427857 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
3 Hb_002265_010 0.0990412487 - - ef-hand calcium binding protein, putative [Ricinus communis]
4 Hb_006120_040 0.1027164476 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
5 Hb_006555_040 0.1035576447 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
6 Hb_000836_350 0.1059622724 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
7 Hb_001322_020 0.1081362252 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
8 Hb_003925_060 0.1111096671 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
9 Hb_001369_030 0.1149700794 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
10 Hb_001930_030 0.1162763259 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
11 Hb_002255_040 0.1179908504 - - PREDICTED: biotin synthase [Jatropha curcas]
12 Hb_002218_020 0.1181770068 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
13 Hb_000086_430 0.1209151422 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
14 Hb_000445_210 0.121061258 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
15 Hb_004725_030 0.1222997417 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
16 Hb_000327_330 0.1224397543 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000663_020 0.122556327 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000011_240 0.1226949804 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
19 Hb_002026_090 0.1228623645 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
20 Hb_001621_110 0.1236400058 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]

Gene co-expression network

sample Hb_155025_010 Hb_155025_010 Hb_000140_440 Hb_000140_440 Hb_155025_010--Hb_000140_440 Hb_002265_010 Hb_002265_010 Hb_155025_010--Hb_002265_010 Hb_006120_040 Hb_006120_040 Hb_155025_010--Hb_006120_040 Hb_006555_040 Hb_006555_040 Hb_155025_010--Hb_006555_040 Hb_000836_350 Hb_000836_350 Hb_155025_010--Hb_000836_350 Hb_001322_020 Hb_001322_020 Hb_155025_010--Hb_001322_020 Hb_000140_440--Hb_006555_040 Hb_004994_080 Hb_004994_080 Hb_000140_440--Hb_004994_080 Hb_007451_040 Hb_007451_040 Hb_000140_440--Hb_007451_040 Hb_002218_020 Hb_002218_020 Hb_000140_440--Hb_002218_020 Hb_000181_060 Hb_000181_060 Hb_000140_440--Hb_000181_060 Hb_006502_020 Hb_006502_020 Hb_002265_010--Hb_006502_020 Hb_005873_020 Hb_005873_020 Hb_002265_010--Hb_005873_020 Hb_005731_110 Hb_005731_110 Hb_002265_010--Hb_005731_110 Hb_000663_020 Hb_000663_020 Hb_002265_010--Hb_000663_020 Hb_065525_130 Hb_065525_130 Hb_002265_010--Hb_065525_130 Hb_000663_080 Hb_000663_080 Hb_006120_040--Hb_000663_080 Hb_000085_190 Hb_000085_190 Hb_006120_040--Hb_000085_190 Hb_000086_270 Hb_000086_270 Hb_006120_040--Hb_000086_270 Hb_003228_100 Hb_003228_100 Hb_006120_040--Hb_003228_100 Hb_087313_010 Hb_087313_010 Hb_006120_040--Hb_087313_010 Hb_000011_240 Hb_000011_240 Hb_006120_040--Hb_000011_240 Hb_001930_030 Hb_001930_030 Hb_006555_040--Hb_001930_030 Hb_006555_040--Hb_004994_080 Hb_007263_010 Hb_007263_010 Hb_006555_040--Hb_007263_010 Hb_002255_040 Hb_002255_040 Hb_006555_040--Hb_002255_040 Hb_011386_050 Hb_011386_050 Hb_006555_040--Hb_011386_050 Hb_005235_070 Hb_005235_070 Hb_000836_350--Hb_005235_070 Hb_002107_050 Hb_002107_050 Hb_000836_350--Hb_002107_050 Hb_006569_040 Hb_006569_040 Hb_000836_350--Hb_006569_040 Hb_000836_350--Hb_000140_440 Hb_000836_350--Hb_002218_020 Hb_000959_220 Hb_000959_220 Hb_001322_020--Hb_000959_220 Hb_003470_040 Hb_003470_040 Hb_001322_020--Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_001322_020--Hb_029695_080 Hb_000062_360 Hb_000062_360 Hb_001322_020--Hb_000062_360 Hb_003506_030 Hb_003506_030 Hb_001322_020--Hb_003506_030 Hb_014231_020 Hb_014231_020 Hb_001322_020--Hb_014231_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.00225 7.9283 18.4635 5.48298 3.39297 3.87385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50412 3.47221 1.68061 2.20588 7.39354

CAGE analysis