Hb_065525_130

Information

Type -
Description -
Location Contig65525: 111075-117970
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21430g
description POPTRDRAFT_1092152; methionyl-tRNA synthetase family protein
nr
ID XP_012089507.1
description PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
swissprot
ID Q55729
description Methionine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=metG PE=3 SV=1
trembl
ID A0A067L949
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01491 PE=3 SV=1
Gene Ontology
ID GO:0005739
description probable methionine--trna mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52682: 111078-117562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065525_130 0.0 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
2 Hb_000085_140 0.0805394663 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
3 Hb_012098_150 0.0901713228 - - ARC5 protein [Manihot esculenta]
4 Hb_002870_020 0.0937527664 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
5 Hb_001105_050 0.1006452444 - - PREDICTED: uncharacterized protein LOC105642744 isoform X1 [Jatropha curcas]
6 Hb_001619_050 0.1020218042 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
7 Hb_008206_060 0.1040186177 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000175_590 0.1044139949 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
9 Hb_000538_260 0.1059105522 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
10 Hb_006570_010 0.1087690692 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000445_140 0.1125977491 - - hypothetical protein RCOM_0561550 [Ricinus communis]
12 Hb_005271_160 0.1139656226 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
13 Hb_048141_030 0.1146158411 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
14 Hb_004116_160 0.1155908356 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
15 Hb_048476_150 0.1194304636 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
16 Hb_000098_240 0.1218580621 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
17 Hb_000663_020 0.1222066738 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
18 Hb_005895_010 0.1227236902 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
19 Hb_003225_020 0.1235862144 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
20 Hb_003638_010 0.1243402702 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_065525_130 Hb_065525_130 Hb_000085_140 Hb_000085_140 Hb_065525_130--Hb_000085_140 Hb_012098_150 Hb_012098_150 Hb_065525_130--Hb_012098_150 Hb_002870_020 Hb_002870_020 Hb_065525_130--Hb_002870_020 Hb_001105_050 Hb_001105_050 Hb_065525_130--Hb_001105_050 Hb_001619_050 Hb_001619_050 Hb_065525_130--Hb_001619_050 Hb_008206_060 Hb_008206_060 Hb_065525_130--Hb_008206_060 Hb_002615_120 Hb_002615_120 Hb_000085_140--Hb_002615_120 Hb_032202_080 Hb_032202_080 Hb_000085_140--Hb_032202_080 Hb_001377_110 Hb_001377_110 Hb_000085_140--Hb_001377_110 Hb_005895_010 Hb_005895_010 Hb_000085_140--Hb_005895_010 Hb_098209_010 Hb_098209_010 Hb_000085_140--Hb_098209_010 Hb_000071_150 Hb_000071_150 Hb_012098_150--Hb_000071_150 Hb_001541_100 Hb_001541_100 Hb_012098_150--Hb_001541_100 Hb_000445_140 Hb_000445_140 Hb_012098_150--Hb_000445_140 Hb_006570_010 Hb_006570_010 Hb_012098_150--Hb_006570_010 Hb_003398_100 Hb_003398_100 Hb_012098_150--Hb_003398_100 Hb_003228_100 Hb_003228_100 Hb_002870_020--Hb_003228_100 Hb_004032_370 Hb_004032_370 Hb_002870_020--Hb_004032_370 Hb_002870_020--Hb_001619_050 Hb_000663_020 Hb_000663_020 Hb_002870_020--Hb_000663_020 Hb_077026_010 Hb_077026_010 Hb_002870_020--Hb_077026_010 Hb_002870_020--Hb_000445_140 Hb_001105_050--Hb_000085_140 Hb_005288_080 Hb_005288_080 Hb_001105_050--Hb_005288_080 Hb_000436_100 Hb_000436_100 Hb_001105_050--Hb_000436_100 Hb_000042_340 Hb_000042_340 Hb_001105_050--Hb_000042_340 Hb_003638_010 Hb_003638_010 Hb_001105_050--Hb_003638_010 Hb_001619_050--Hb_000445_140 Hb_000640_160 Hb_000640_160 Hb_001619_050--Hb_000640_160 Hb_001014_100 Hb_001014_100 Hb_001619_050--Hb_001014_100 Hb_003225_020 Hb_003225_020 Hb_001619_050--Hb_003225_020 Hb_017151_010 Hb_017151_010 Hb_001619_050--Hb_017151_010 Hb_000015_100 Hb_000015_100 Hb_008206_060--Hb_000015_100 Hb_031284_070 Hb_031284_070 Hb_008206_060--Hb_031284_070 Hb_010812_050 Hb_010812_050 Hb_008206_060--Hb_010812_050 Hb_000331_130 Hb_000331_130 Hb_008206_060--Hb_000331_130 Hb_000363_060 Hb_000363_060 Hb_008206_060--Hb_000363_060 Hb_008206_060--Hb_000445_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3584 8.60071 22.4157 8.6358 11.293 14.2023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91522 3.50854 2.79059 4.13273 15.2763

CAGE analysis