Hb_012098_150

Information

Type -
Description -
Location Contig12098: 89389-97699
Sequence    

Annotation

kegg
ID rcu:RCOM_1411100
description GTP binding protein, putative
nr
ID AEP13980.1
description ARC5 protein [Manihot esculenta]
swissprot
ID Q84N64
description Dynamin-like protein ARC5 OS=Arabidopsis thaliana GN=ARC5 PE=1 SV=2
trembl
ID G5DCB5
description ARC5 protein OS=Manihot esculenta GN=ARC5 PE=2 SV=1
Gene Ontology
ID GO:0003924
description dynamin-like protein arc5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06460: 89330-97640
cDNA
(Sanger)
(ID:Location)		 002_F15.ab1: 89365-90847 , 007_O03.ab1: 89330-90824 , 046_J08.ab1: 89330-90847 , 049_D05.ab1: 89334-90716 , 050_P23.ab1: 89334-90774

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012098_150 0.0 - - ARC5 protein [Manihot esculenta]
2 Hb_065525_130 0.0901713228 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_000071_150 0.1042374817 - - Stearoy-ACP desaturase [Ricinus communis]
4 Hb_001541_100 0.1113076737 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
5 Hb_000445_140 0.1135584454 - - hypothetical protein RCOM_0561550 [Ricinus communis]
6 Hb_006570_010 0.116006095 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003398_100 0.1174259507 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000820_150 0.1189205255 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
9 Hb_013726_080 0.118959163 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
10 Hb_002870_020 0.1195667699 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
11 Hb_004032_370 0.1215271719 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]
12 Hb_000085_140 0.1230576232 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
13 Hb_002105_010 0.1244013261 - - conserved hypothetical protein [Ricinus communis]
14 Hb_171334_010 0.1246293088 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
15 Hb_005895_010 0.1246867482 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
16 Hb_001619_050 0.1247898851 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
17 Hb_000365_100 0.1262511732 - - PREDICTED: probable galacturonosyltransferase 7 isoform X1 [Jatropha curcas]
18 Hb_000029_110 0.1269337835 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002871_140 0.1284032175 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
20 Hb_005271_160 0.1308339193 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]

Gene co-expression network

sample Hb_012098_150 Hb_012098_150 Hb_065525_130 Hb_065525_130 Hb_012098_150--Hb_065525_130 Hb_000071_150 Hb_000071_150 Hb_012098_150--Hb_000071_150 Hb_001541_100 Hb_001541_100 Hb_012098_150--Hb_001541_100 Hb_000445_140 Hb_000445_140 Hb_012098_150--Hb_000445_140 Hb_006570_010 Hb_006570_010 Hb_012098_150--Hb_006570_010 Hb_003398_100 Hb_003398_100 Hb_012098_150--Hb_003398_100 Hb_000085_140 Hb_000085_140 Hb_065525_130--Hb_000085_140 Hb_002870_020 Hb_002870_020 Hb_065525_130--Hb_002870_020 Hb_001105_050 Hb_001105_050 Hb_065525_130--Hb_001105_050 Hb_001619_050 Hb_001619_050 Hb_065525_130--Hb_001619_050 Hb_008206_060 Hb_008206_060 Hb_065525_130--Hb_008206_060 Hb_171334_010 Hb_171334_010 Hb_000071_150--Hb_171334_010 Hb_005895_010 Hb_005895_010 Hb_000071_150--Hb_005895_010 Hb_002871_140 Hb_002871_140 Hb_000071_150--Hb_002871_140 Hb_000072_090 Hb_000072_090 Hb_000071_150--Hb_000072_090 Hb_000056_130 Hb_000056_130 Hb_000071_150--Hb_000056_130 Hb_000029_110 Hb_000029_110 Hb_001541_100--Hb_000029_110 Hb_002471_110 Hb_002471_110 Hb_001541_100--Hb_002471_110 Hb_001959_240 Hb_001959_240 Hb_001541_100--Hb_001959_240 Hb_001541_100--Hb_002871_140 Hb_001541_100--Hb_003398_100 Hb_000445_140--Hb_001619_050 Hb_001014_100 Hb_001014_100 Hb_000445_140--Hb_001014_100 Hb_005496_050 Hb_005496_050 Hb_000445_140--Hb_005496_050 Hb_017151_010 Hb_017151_010 Hb_000445_140--Hb_017151_010 Hb_025557_050 Hb_025557_050 Hb_000445_140--Hb_025557_050 Hb_000445_140--Hb_002870_020 Hb_006570_010--Hb_000085_140 Hb_006570_010--Hb_065525_130 Hb_001205_300 Hb_001205_300 Hb_006570_010--Hb_001205_300 Hb_003462_070 Hb_003462_070 Hb_006570_010--Hb_003462_070 Hb_001348_190 Hb_001348_190 Hb_006570_010--Hb_001348_190 Hb_000820_150 Hb_000820_150 Hb_003398_100--Hb_000820_150 Hb_033642_040 Hb_033642_040 Hb_003398_100--Hb_033642_040 Hb_003104_040 Hb_003104_040 Hb_003398_100--Hb_003104_040 Hb_001789_020 Hb_001789_020 Hb_003398_100--Hb_001789_020 Hb_002784_030 Hb_002784_030 Hb_003398_100--Hb_002784_030 Hb_073973_150 Hb_073973_150 Hb_003398_100--Hb_073973_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3292 9.52946 37.5186 22.9366 20.3283 24.7612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.47963 3.3426 6.23318 8.54939 29.6993

CAGE analysis