Hb_000029_110

Information

Type -
Description -
Location Contig29: 110536-115225
Sequence    

Annotation

kegg
ID rcu:RCOM_1282200
description hypothetical protein
nr
ID XP_002523846.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCX7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1282200 PE=4 SV=1
Gene Ontology
ID GO:0009058
description nf-kappa-b inhibitor-like protein 2 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30351: 110538-113773 , PASA_asmbl_30352: 112092-112204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001541_100 0.0936480493 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
3 Hb_000108_020 0.1003116911 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
4 Hb_006006_060 0.1029066228 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
5 Hb_000309_020 0.1041936323 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
6 Hb_000480_040 0.1051189532 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
7 Hb_000116_190 0.106823944 - - conserved hypothetical protein [Ricinus communis]
8 Hb_022693_130 0.1081654646 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_000085_070 0.1084971066 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000645_180 0.1088844332 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
11 Hb_000703_290 0.1095812489 - - aldo/keto reductase, putative [Ricinus communis]
12 Hb_003462_060 0.1153439633 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
13 Hb_000144_060 0.115794986 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000920_030 0.1176869709 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_009524_030 0.1181993123 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
16 Hb_006846_070 0.1194187186 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
17 Hb_025477_050 0.1194907211 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000608_380 0.1201692729 - - conserved hypothetical protein [Ricinus communis]
19 Hb_068079_010 0.1212587987 - - -
20 Hb_003752_070 0.1215211645 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_110 Hb_000029_110 Hb_001541_100 Hb_001541_100 Hb_000029_110--Hb_001541_100 Hb_000108_020 Hb_000108_020 Hb_000029_110--Hb_000108_020 Hb_006006_060 Hb_006006_060 Hb_000029_110--Hb_006006_060 Hb_000309_020 Hb_000309_020 Hb_000029_110--Hb_000309_020 Hb_000480_040 Hb_000480_040 Hb_000029_110--Hb_000480_040 Hb_000116_190 Hb_000116_190 Hb_000029_110--Hb_000116_190 Hb_012098_150 Hb_012098_150 Hb_001541_100--Hb_012098_150 Hb_002471_110 Hb_002471_110 Hb_001541_100--Hb_002471_110 Hb_001959_240 Hb_001959_240 Hb_001541_100--Hb_001959_240 Hb_002871_140 Hb_002871_140 Hb_001541_100--Hb_002871_140 Hb_003398_100 Hb_003398_100 Hb_001541_100--Hb_003398_100 Hb_068079_010 Hb_068079_010 Hb_000108_020--Hb_068079_010 Hb_000085_070 Hb_000085_070 Hb_000108_020--Hb_000085_070 Hb_022693_130 Hb_022693_130 Hb_000108_020--Hb_022693_130 Hb_160271_010 Hb_160271_010 Hb_000108_020--Hb_160271_010 Hb_000645_180 Hb_000645_180 Hb_000108_020--Hb_000645_180 Hb_000108_020--Hb_000480_040 Hb_000200_350 Hb_000200_350 Hb_006006_060--Hb_000200_350 Hb_006006_060--Hb_022693_130 Hb_000388_150 Hb_000388_150 Hb_006006_060--Hb_000388_150 Hb_010344_030 Hb_010344_030 Hb_006006_060--Hb_010344_030 Hb_011926_040 Hb_011926_040 Hb_006006_060--Hb_011926_040 Hb_010984_020 Hb_010984_020 Hb_006006_060--Hb_010984_020 Hb_002542_160 Hb_002542_160 Hb_000309_020--Hb_002542_160 Hb_000309_020--Hb_000480_040 Hb_000220_210 Hb_000220_210 Hb_000309_020--Hb_000220_210 Hb_000345_370 Hb_000345_370 Hb_000309_020--Hb_000345_370 Hb_000309_020--Hb_000085_070 Hb_000144_060 Hb_000144_060 Hb_000309_020--Hb_000144_060 Hb_011861_050 Hb_011861_050 Hb_000480_040--Hb_011861_050 Hb_000480_040--Hb_000085_070 Hb_000941_100 Hb_000941_100 Hb_000480_040--Hb_000941_100 Hb_001195_770 Hb_001195_770 Hb_000480_040--Hb_001195_770 Hb_001051_050 Hb_001051_050 Hb_000116_190--Hb_001051_050 Hb_000116_190--Hb_002871_140 Hb_000903_010 Hb_000903_010 Hb_000116_190--Hb_000903_010 Hb_009524_030 Hb_009524_030 Hb_000116_190--Hb_009524_030 Hb_002774_190 Hb_002774_190 Hb_000116_190--Hb_002774_190 Hb_001242_120 Hb_001242_120 Hb_000116_190--Hb_001242_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.38139 1.43178 8.03969 5.75759 3.54431 3.99283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03797 1.67768 1.42796 2.66743 10.1687

CAGE analysis