Hb_009524_030

Information

Type -
Description -
Location Contig9524: 23199-27577
Sequence    

Annotation

kegg
ID rcu:RCOM_1455560
description hypothetical protein
nr
ID XP_012093332.1
description PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LIC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19212 PE=4 SV=1
Gene Ontology
ID GO:0009941
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63439: 23251-27686
cDNA
(Sanger)
(ID:Location)		 010_I11.ab1: 23309-27386 , 016_N10.ab1: 23251-27423 , 043_H21.ab1: 23251-27412 , 046_M14.ab1: 23251-27314

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009524_030 0.0 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
2 Hb_000265_070 0.0788751867 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
3 Hb_000358_210 0.0910435015 - - oligosaccharyl transferase, putative [Ricinus communis]
4 Hb_000085_070 0.0945118004 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000116_190 0.0979665254 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007741_120 0.0980395072 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
7 Hb_024570_040 0.103752435 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
8 Hb_002392_020 0.1102622263 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
9 Hb_000029_110 0.1181993123 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000108_020 0.1192577063 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
11 Hb_003355_010 0.1202651183 - - Heat shock 70 kDa protein, putative [Ricinus communis]
12 Hb_004710_020 0.1212071075 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
13 Hb_006573_150 0.1222232583 - - PREDICTED: DNA-directed primase/polymerase protein [Jatropha curcas]
14 Hb_002871_140 0.1227466847 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
15 Hb_004884_180 0.1229536497 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
16 Hb_068079_010 0.1234245878 - - -
17 Hb_003490_060 0.1246226934 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
18 Hb_007943_150 0.1262473733 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
19 Hb_002828_060 0.1270918961 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
20 Hb_002902_140 0.1272960084 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_009524_030 Hb_009524_030 Hb_000265_070 Hb_000265_070 Hb_009524_030--Hb_000265_070 Hb_000358_210 Hb_000358_210 Hb_009524_030--Hb_000358_210 Hb_000085_070 Hb_000085_070 Hb_009524_030--Hb_000085_070 Hb_000116_190 Hb_000116_190 Hb_009524_030--Hb_000116_190 Hb_007741_120 Hb_007741_120 Hb_009524_030--Hb_007741_120 Hb_024570_040 Hb_024570_040 Hb_009524_030--Hb_024570_040 Hb_000265_070--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_000265_070--Hb_070624_010 Hb_002392_020 Hb_002392_020 Hb_000265_070--Hb_002392_020 Hb_007943_150 Hb_007943_150 Hb_000265_070--Hb_007943_150 Hb_000645_180 Hb_000645_180 Hb_000265_070--Hb_000645_180 Hb_000358_210--Hb_002392_020 Hb_000358_210--Hb_070624_010 Hb_000926_060 Hb_000926_060 Hb_000358_210--Hb_000926_060 Hb_003490_060 Hb_003490_060 Hb_000358_210--Hb_003490_060 Hb_002284_100 Hb_002284_100 Hb_000358_210--Hb_002284_100 Hb_000108_020 Hb_000108_020 Hb_000085_070--Hb_000108_020 Hb_000309_020 Hb_000309_020 Hb_000085_070--Hb_000309_020 Hb_000480_040 Hb_000480_040 Hb_000085_070--Hb_000480_040 Hb_002542_160 Hb_002542_160 Hb_000085_070--Hb_002542_160 Hb_003355_010 Hb_003355_010 Hb_000085_070--Hb_003355_010 Hb_000220_210 Hb_000220_210 Hb_000085_070--Hb_000220_210 Hb_001051_050 Hb_001051_050 Hb_000116_190--Hb_001051_050 Hb_002871_140 Hb_002871_140 Hb_000116_190--Hb_002871_140 Hb_000903_010 Hb_000903_010 Hb_000116_190--Hb_000903_010 Hb_002774_190 Hb_002774_190 Hb_000116_190--Hb_002774_190 Hb_001242_120 Hb_001242_120 Hb_000116_190--Hb_001242_120 Hb_006573_150 Hb_006573_150 Hb_007741_120--Hb_006573_150 Hb_106890_010 Hb_106890_010 Hb_007741_120--Hb_106890_010 Hb_007933_040 Hb_007933_040 Hb_007741_120--Hb_007933_040 Hb_003159_050 Hb_003159_050 Hb_007741_120--Hb_003159_050 Hb_007741_120--Hb_003355_010 Hb_007741_120--Hb_001242_120 Hb_002232_490 Hb_002232_490 Hb_024570_040--Hb_002232_490 Hb_024570_040--Hb_002284_100 Hb_000849_080 Hb_000849_080 Hb_024570_040--Hb_000849_080 Hb_024570_040--Hb_002392_020 Hb_024570_040--Hb_000358_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.97062 3.81651 20.3652 14.4362 10.0547 9.98212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.4175 5.0475 3.52675 16.9941 26.4243

CAGE analysis