Hb_006573_150

Information

Type -
Description -
Location Contig6573: 94770-101240
Sequence    

Annotation

kegg
ID rcu:RCOM_1582000
description hypothetical protein
nr
ID XP_012090174.1
description PREDICTED: DNA-directed primase/polymerase protein [Jatropha curcas]
swissprot
ID Q32PL8
description DNA-directed primase/polymerase protein OS=Danio rerio GN=primpol PE=2 SV=2
trembl
ID B9RIS2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582000 PE=4 SV=1
Gene Ontology
ID GO:0003896
description dna-directed primase polymerase protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52812: 96525-97246 , PASA_asmbl_52813: 98948-100376 , PASA_asmbl_52814: 99651-100419 , PASA_asmbl_52815: 100613-101126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_150 0.0 - - PREDICTED: DNA-directed primase/polymerase protein [Jatropha curcas]
2 Hb_007741_120 0.0579487948 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
3 Hb_012733_040 0.0862317309 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
4 Hb_003159_050 0.0923927373 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_007741_110 0.0945274058 - - -
6 Hb_000364_050 0.0966945715 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
7 Hb_012150_030 0.0983566388 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
8 Hb_187247_020 0.0991502978 - - PREDICTED: uncharacterized protein LOC101220469 [Cucumis sativus]
9 Hb_003053_110 0.1002747792 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
10 Hb_106890_010 0.1026728623 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
11 Hb_134849_010 0.1030452647 - - ATP synthase subunit d, putative [Ricinus communis]
12 Hb_004452_120 0.1034178989 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
13 Hb_010863_050 0.1035238003 - - OTU domain-containing protein 6B, putative [Ricinus communis]
14 Hb_001438_010 0.1050409968 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
15 Hb_005260_030 0.1051574104 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
16 Hb_001981_040 0.1054596569 transcription factor TF Family: PHD PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]
17 Hb_003355_010 0.1054889954 - - Heat shock 70 kDa protein, putative [Ricinus communis]
18 Hb_007933_040 0.1056329635 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
19 Hb_000062_510 0.1080884322 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
20 Hb_000207_300 0.1087978055 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_006573_150 Hb_006573_150 Hb_007741_120 Hb_007741_120 Hb_006573_150--Hb_007741_120 Hb_012733_040 Hb_012733_040 Hb_006573_150--Hb_012733_040 Hb_003159_050 Hb_003159_050 Hb_006573_150--Hb_003159_050 Hb_007741_110 Hb_007741_110 Hb_006573_150--Hb_007741_110 Hb_000364_050 Hb_000364_050 Hb_006573_150--Hb_000364_050 Hb_012150_030 Hb_012150_030 Hb_006573_150--Hb_012150_030 Hb_106890_010 Hb_106890_010 Hb_007741_120--Hb_106890_010 Hb_007933_040 Hb_007933_040 Hb_007741_120--Hb_007933_040 Hb_007741_120--Hb_003159_050 Hb_003355_010 Hb_003355_010 Hb_007741_120--Hb_003355_010 Hb_001242_120 Hb_001242_120 Hb_007741_120--Hb_001242_120 Hb_012733_040--Hb_001242_120 Hb_001195_400 Hb_001195_400 Hb_012733_040--Hb_001195_400 Hb_002301_100 Hb_002301_100 Hb_012733_040--Hb_002301_100 Hb_012733_040--Hb_000364_050 Hb_004452_120 Hb_004452_120 Hb_012733_040--Hb_004452_120 Hb_012733_040--Hb_003159_050 Hb_001269_600 Hb_001269_600 Hb_003159_050--Hb_001269_600 Hb_003159_050--Hb_007933_040 Hb_012393_030 Hb_012393_030 Hb_003159_050--Hb_012393_030 Hb_009615_060 Hb_009615_060 Hb_003159_050--Hb_009615_060 Hb_003053_110 Hb_003053_110 Hb_007741_110--Hb_003053_110 Hb_006907_060 Hb_006907_060 Hb_007741_110--Hb_006907_060 Hb_000107_430 Hb_000107_430 Hb_007741_110--Hb_000107_430 Hb_001438_010 Hb_001438_010 Hb_007741_110--Hb_001438_010 Hb_007741_110--Hb_012150_030 Hb_002631_240 Hb_002631_240 Hb_007741_110--Hb_002631_240 Hb_007904_230 Hb_007904_230 Hb_000364_050--Hb_007904_230 Hb_000364_050--Hb_004452_120 Hb_001269_130 Hb_001269_130 Hb_000364_050--Hb_001269_130 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050 Hb_012150_030--Hb_003053_110 Hb_012150_030--Hb_004452_120 Hb_012150_030--Hb_010863_050 Hb_134849_010 Hb_134849_010 Hb_012150_030--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_012150_030--Hb_048093_010 Hb_000941_100 Hb_000941_100 Hb_012150_030--Hb_000941_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4273 0.678014 2.75991 2.00169 0.866669 1.02129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05327 1.28542 1.15597 2.4416 3.50736

CAGE analysis