Hb_003398_100

Information

Type -
Description -
Location Contig3398: 165791-172942
Sequence    

Annotation

kegg
ID rcu:RCOM_0001380
description hypothetical protein
nr
ID XP_002533154.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8VZ79
description Protein INVOLVED IN DE NOVO 2 OS=Arabidopsis thaliana GN=IDN2 PE=1 SV=1
trembl
ID B9T4I5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0001380 PE=4 SV=1
Gene Ontology
ID GO:0031047
description protein involved in de novo 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35462: 165827-172830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000820_150 0.0807350005 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
3 Hb_033642_040 0.0944037032 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
4 Hb_003104_040 0.0978596579 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
5 Hb_001789_020 0.1000932965 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
6 Hb_002784_030 0.1023440455 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
7 Hb_073973_150 0.1026756113 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
8 Hb_000070_030 0.1060789065 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
9 Hb_005323_010 0.1064761963 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
10 Hb_001153_050 0.1086409104 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
11 Hb_000098_240 0.1089806955 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
12 Hb_000640_070 0.1107330584 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
13 Hb_004096_060 0.1109020172 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
14 Hb_000634_020 0.1113398699 - - hypothetical protein JCGZ_11888 [Jatropha curcas]
15 Hb_002749_080 0.1128713608 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002871_140 0.1138815425 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
17 Hb_000103_570 0.113956811 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
18 Hb_003687_210 0.1144871101 - - PREDICTED: malate dehydrogenase [Populus euphratica]
19 Hb_000562_050 0.1151223457 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
20 Hb_012098_150 0.1174259507 - - ARC5 protein [Manihot esculenta]

Gene co-expression network

sample Hb_003398_100 Hb_003398_100 Hb_000820_150 Hb_000820_150 Hb_003398_100--Hb_000820_150 Hb_033642_040 Hb_033642_040 Hb_003398_100--Hb_033642_040 Hb_003104_040 Hb_003104_040 Hb_003398_100--Hb_003104_040 Hb_001789_020 Hb_001789_020 Hb_003398_100--Hb_001789_020 Hb_002784_030 Hb_002784_030 Hb_003398_100--Hb_002784_030 Hb_073973_150 Hb_073973_150 Hb_003398_100--Hb_073973_150 Hb_001194_020 Hb_001194_020 Hb_000820_150--Hb_001194_020 Hb_000820_150--Hb_033642_040 Hb_098209_010 Hb_098209_010 Hb_000820_150--Hb_098209_010 Hb_005895_010 Hb_005895_010 Hb_000820_150--Hb_005895_010 Hb_000640_070 Hb_000640_070 Hb_000820_150--Hb_000640_070 Hb_004096_060 Hb_004096_060 Hb_033642_040--Hb_004096_060 Hb_000098_240 Hb_000098_240 Hb_033642_040--Hb_000098_240 Hb_000175_410 Hb_000175_410 Hb_033642_040--Hb_000175_410 Hb_016777_040 Hb_016777_040 Hb_033642_040--Hb_016777_040 Hb_008397_010 Hb_008397_010 Hb_033642_040--Hb_008397_010 Hb_003104_040--Hb_073973_150 Hb_012215_010 Hb_012215_010 Hb_003104_040--Hb_012215_010 Hb_005053_010 Hb_005053_010 Hb_003104_040--Hb_005053_010 Hb_010272_010 Hb_010272_010 Hb_003104_040--Hb_010272_010 Hb_003104_040--Hb_000640_070 Hb_002539_110 Hb_002539_110 Hb_003104_040--Hb_002539_110 Hb_000562_050 Hb_000562_050 Hb_001789_020--Hb_000562_050 Hb_158092_080 Hb_158092_080 Hb_001789_020--Hb_158092_080 Hb_007035_040 Hb_007035_040 Hb_001789_020--Hb_007035_040 Hb_000011_270 Hb_000011_270 Hb_001789_020--Hb_000011_270 Hb_005701_090 Hb_005701_090 Hb_001789_020--Hb_005701_090 Hb_002784_030--Hb_000640_070 Hb_001552_030 Hb_001552_030 Hb_002784_030--Hb_001552_030 Hb_002784_030--Hb_012215_010 Hb_002784_030--Hb_008397_010 Hb_002475_040 Hb_002475_040 Hb_002784_030--Hb_002475_040 Hb_002784_030--Hb_073973_150 Hb_073973_150--Hb_000640_070 Hb_073973_150--Hb_001194_020 Hb_073973_150--Hb_008397_010 Hb_000284_230 Hb_000284_230 Hb_073973_150--Hb_000284_230 Hb_073973_150--Hb_002475_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0422 10.4291 26.8644 19.3404 15.7077 18.0932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.95264 2.73548 5.39905 18.1224 23.4407

CAGE analysis