Hb_007035_040

Information

Type -
Description -
Location Contig7035: 62085-67423
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05260g
description POPTRDRAFT_569821; hypothetical protein
nr
ID XP_012093011.1
description PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
swissprot
ID Q6YYA3
description Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1
trembl
ID A0A067JJH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05894 PE=4 SV=1
Gene Ontology
ID GO:0003723
description chloroplastic group iia intron splicing facilitator chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54986: 62172-67418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007035_040 0.0 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
2 Hb_000245_150 0.075475015 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
3 Hb_000320_470 0.0766182492 - - calcium-dependent protein kinase [Hevea brasiliensis]
4 Hb_002233_130 0.0797985618 - - transporter, putative [Ricinus communis]
5 Hb_000331_130 0.0802305248 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
6 Hb_004884_180 0.0871984556 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
7 Hb_001008_050 0.0897141408 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
8 Hb_026053_040 0.0929427015 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004324_330 0.0934677118 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
10 Hb_000181_100 0.0950990689 - - PREDICTED: protein starmaker [Jatropha curcas]
11 Hb_089246_010 0.0954363538 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
12 Hb_004800_180 0.0956644531 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
13 Hb_000103_570 0.0978263717 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
14 Hb_000771_170 0.1017390813 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_001789_020 0.1030086584 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
16 Hb_000175_410 0.1072619378 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
17 Hb_000878_160 0.1075975779 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
18 Hb_000826_070 0.1086293274 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001008_070 0.1089173116 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
20 Hb_000363_060 0.1090260664 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007035_040 Hb_007035_040 Hb_000245_150 Hb_000245_150 Hb_007035_040--Hb_000245_150 Hb_000320_470 Hb_000320_470 Hb_007035_040--Hb_000320_470 Hb_002233_130 Hb_002233_130 Hb_007035_040--Hb_002233_130 Hb_000331_130 Hb_000331_130 Hb_007035_040--Hb_000331_130 Hb_004884_180 Hb_004884_180 Hb_007035_040--Hb_004884_180 Hb_001008_050 Hb_001008_050 Hb_007035_040--Hb_001008_050 Hb_000205_260 Hb_000205_260 Hb_000245_150--Hb_000205_260 Hb_005523_020 Hb_005523_020 Hb_000245_150--Hb_005523_020 Hb_007283_010 Hb_007283_010 Hb_000245_150--Hb_007283_010 Hb_000457_230 Hb_000457_230 Hb_000245_150--Hb_000457_230 Hb_000878_160 Hb_000878_160 Hb_000245_150--Hb_000878_160 Hb_000181_100 Hb_000181_100 Hb_000320_470--Hb_000181_100 Hb_026053_040 Hb_026053_040 Hb_000320_470--Hb_026053_040 Hb_000320_470--Hb_001008_050 Hb_001008_070 Hb_001008_070 Hb_000320_470--Hb_001008_070 Hb_031091_020 Hb_031091_020 Hb_000320_470--Hb_031091_020 Hb_089246_010 Hb_089246_010 Hb_000320_470--Hb_089246_010 Hb_001244_150 Hb_001244_150 Hb_002233_130--Hb_001244_150 Hb_000260_560 Hb_000260_560 Hb_002233_130--Hb_000260_560 Hb_004324_330 Hb_004324_330 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040 Hb_001662_140 Hb_001662_140 Hb_000331_130--Hb_001662_140 Hb_001660_120 Hb_001660_120 Hb_000331_130--Hb_001660_120 Hb_000331_130--Hb_004884_180 Hb_000363_060 Hb_000363_060 Hb_000331_130--Hb_000363_060 Hb_000331_130--Hb_002233_130 Hb_001472_160 Hb_001472_160 Hb_004884_180--Hb_001472_160 Hb_000220_210 Hb_000220_210 Hb_004884_180--Hb_000220_210 Hb_031042_060 Hb_031042_060 Hb_004884_180--Hb_031042_060 Hb_000771_170 Hb_000771_170 Hb_004884_180--Hb_000771_170 Hb_010174_090 Hb_010174_090 Hb_004884_180--Hb_010174_090 Hb_004225_040 Hb_004225_040 Hb_004884_180--Hb_004225_040 Hb_001008_050--Hb_000181_100 Hb_002391_050 Hb_002391_050 Hb_001008_050--Hb_002391_050 Hb_001935_160 Hb_001935_160 Hb_001008_050--Hb_001935_160 Hb_001008_050--Hb_001008_070 Hb_001008_050--Hb_089246_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0377 11.891 19.1728 7.62771 12.4233 12.3425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91249 3.68527 4.88119 12.7627 24.5699

CAGE analysis