Hb_031042_060

Information

Type -
Description -
Location Contig31042: 53121-60096
Sequence    

Annotation

kegg
ID pop:POPTR_0017s05750g
description asparaginyl-tRNA synthetase family protein
nr
ID XP_012069983.1
description PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID O48593
description Asparagine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3
trembl
ID A0A067KY19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03404 PE=3 SV=1
Gene Ontology
ID GO:0009570
description asparagine--trna chloroplastic mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32859: 53222-60044
cDNA
(Sanger)
(ID:Location)		 024_H03.ab1: 58694-60044

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031042_060 0.0 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_001789_160 0.0771429056 - - PREDICTED: putative transporter arsB [Jatropha curcas]
3 Hb_000260_710 0.0811919231 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
4 Hb_004884_180 0.0834026299 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
5 Hb_000363_060 0.08366257 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
6 Hb_010174_090 0.0847868679 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
7 Hb_021650_010 0.0851643075 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
8 Hb_000613_120 0.0889381258 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
9 Hb_000771_170 0.0983768472 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_003529_140 0.099961595 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
11 Hb_001454_150 0.1016646324 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
12 Hb_006787_090 0.1019890431 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
13 Hb_000826_030 0.1021128745 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
14 Hb_114310_070 0.1029706845 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
15 Hb_006569_040 0.1030425591 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
16 Hb_001660_120 0.1034334136 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
17 Hb_003752_070 0.1037110206 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
18 Hb_000302_190 0.1049270983 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
19 Hb_002150_140 0.1056797434 - - PREDICTED: girdin-like [Jatropha curcas]
20 Hb_003071_030 0.1062049888 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_031042_060 Hb_031042_060 Hb_001789_160 Hb_001789_160 Hb_031042_060--Hb_001789_160 Hb_000260_710 Hb_000260_710 Hb_031042_060--Hb_000260_710 Hb_004884_180 Hb_004884_180 Hb_031042_060--Hb_004884_180 Hb_000363_060 Hb_000363_060 Hb_031042_060--Hb_000363_060 Hb_010174_090 Hb_010174_090 Hb_031042_060--Hb_010174_090 Hb_021650_010 Hb_021650_010 Hb_031042_060--Hb_021650_010 Hb_003071_030 Hb_003071_030 Hb_001789_160--Hb_003071_030 Hb_000094_100 Hb_000094_100 Hb_001789_160--Hb_000094_100 Hb_000302_190 Hb_000302_190 Hb_001789_160--Hb_000302_190 Hb_000613_120 Hb_000613_120 Hb_001789_160--Hb_000613_120 Hb_001789_160--Hb_000260_710 Hb_004871_010 Hb_004871_010 Hb_000260_710--Hb_004871_010 Hb_003462_060 Hb_003462_060 Hb_000260_710--Hb_003462_060 Hb_001472_160 Hb_001472_160 Hb_000260_710--Hb_001472_160 Hb_011861_050 Hb_011861_050 Hb_000260_710--Hb_011861_050 Hb_004884_180--Hb_001472_160 Hb_000220_210 Hb_000220_210 Hb_004884_180--Hb_000220_210 Hb_000771_170 Hb_000771_170 Hb_004884_180--Hb_000771_170 Hb_004884_180--Hb_010174_090 Hb_004225_040 Hb_004225_040 Hb_004884_180--Hb_004225_040 Hb_001660_120 Hb_001660_120 Hb_000363_060--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_000363_060--Hb_025477_050 Hb_000363_060--Hb_001472_160 Hb_000331_130 Hb_000331_130 Hb_000363_060--Hb_000331_130 Hb_000144_060 Hb_000144_060 Hb_000363_060--Hb_000144_060 Hb_000311_120 Hb_000311_120 Hb_010174_090--Hb_000311_120 Hb_010174_090--Hb_000613_120 Hb_006787_090 Hb_006787_090 Hb_010174_090--Hb_006787_090 Hb_003529_140 Hb_003529_140 Hb_010174_090--Hb_003529_140 Hb_006569_040 Hb_006569_040 Hb_010174_090--Hb_006569_040 Hb_000826_030 Hb_000826_030 Hb_010174_090--Hb_000826_030 Hb_003752_070 Hb_003752_070 Hb_021650_010--Hb_003752_070 Hb_005162_110 Hb_005162_110 Hb_021650_010--Hb_005162_110 Hb_001232_150 Hb_001232_150 Hb_021650_010--Hb_001232_150 Hb_000051_060 Hb_000051_060 Hb_021650_010--Hb_000051_060 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_001195_270 Hb_001195_270 Hb_021650_010--Hb_001195_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.18363 8.44515 26.9795 9.58644 11.1817 10.44
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.53262 5.30112 4.7751 8.03664 26.5791

CAGE analysis