Hb_003462_060

Information

Type -
Description -
Location Contig3462: 71816-82196
Sequence    

Annotation

kegg
ID rcu:RCOM_0481380
description Protein white, putative (EC:3.6.3.44)
nr
ID XP_012093291.1
description PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
swissprot
ID Q9FF46
description ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1
trembl
ID A0A067LIG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20080 PE=3 SV=1
Gene Ontology
ID GO:0005886
description abc transporter g family member 24-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36104: 72243-74479 , PASA_asmbl_36105: 72243-75061 , PASA_asmbl_36106: 74515-74831 , PASA_asmbl_36108: 76178-77337 , PASA_asmbl_36109: 77379-78486 , PASA_asmbl_36110: 78552-79800 , PASA_asmbl_36111: 79807-82081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_060 0.0 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
2 Hb_000482_050 0.0859975094 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
3 Hb_000260_710 0.0860934677 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
4 Hb_002600_070 0.0861399014 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
5 Hb_022693_130 0.0890366421 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_001396_240 0.0892330796 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
7 Hb_000529_130 0.0903381179 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
8 Hb_001396_020 0.091827004 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
9 Hb_000108_020 0.0933839959 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
10 Hb_068079_010 0.0935422491 - - -
11 Hb_002828_060 0.096648756 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
12 Hb_025477_050 0.0975362387 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000748_090 0.097757968 - - glucose inhibited division protein A, putative [Ricinus communis]
14 Hb_004994_350 0.0983394517 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
15 Hb_010344_030 0.1002178531 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001140_180 0.1013672903 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
17 Hb_000562_070 0.1027278667 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
18 Hb_000320_190 0.1032767086 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
19 Hb_002053_050 0.1040546247 - - Kinesin heavy chain, putative [Ricinus communis]
20 Hb_001421_090 0.1043073106 - - hypothetical protein RCOM_1278080 [Ricinus communis]

Gene co-expression network

sample Hb_003462_060 Hb_003462_060 Hb_000482_050 Hb_000482_050 Hb_003462_060--Hb_000482_050 Hb_000260_710 Hb_000260_710 Hb_003462_060--Hb_000260_710 Hb_002600_070 Hb_002600_070 Hb_003462_060--Hb_002600_070 Hb_022693_130 Hb_022693_130 Hb_003462_060--Hb_022693_130 Hb_001396_240 Hb_001396_240 Hb_003462_060--Hb_001396_240 Hb_000529_130 Hb_000529_130 Hb_003462_060--Hb_000529_130 Hb_002828_060 Hb_002828_060 Hb_000482_050--Hb_002828_060 Hb_004629_030 Hb_004629_030 Hb_000482_050--Hb_004629_030 Hb_001396_020 Hb_001396_020 Hb_000482_050--Hb_001396_020 Hb_000482_050--Hb_002600_070 Hb_007012_030 Hb_007012_030 Hb_000482_050--Hb_007012_030 Hb_000748_090 Hb_000748_090 Hb_000482_050--Hb_000748_090 Hb_004871_010 Hb_004871_010 Hb_000260_710--Hb_004871_010 Hb_031042_060 Hb_031042_060 Hb_000260_710--Hb_031042_060 Hb_001789_160 Hb_001789_160 Hb_000260_710--Hb_001789_160 Hb_001472_160 Hb_001472_160 Hb_000260_710--Hb_001472_160 Hb_011861_050 Hb_011861_050 Hb_000260_710--Hb_011861_050 Hb_002600_070--Hb_000748_090 Hb_002600_070--Hb_007012_030 Hb_000771_170 Hb_000771_170 Hb_002600_070--Hb_000771_170 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_009158_060 Hb_009158_060 Hb_002600_070--Hb_009158_060 Hb_160271_010 Hb_160271_010 Hb_022693_130--Hb_160271_010 Hb_005062_060 Hb_005062_060 Hb_022693_130--Hb_005062_060 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_000645_180 Hb_000645_180 Hb_022693_130--Hb_000645_180 Hb_000108_020 Hb_000108_020 Hb_022693_130--Hb_000108_020 Hb_000107_250 Hb_000107_250 Hb_022693_130--Hb_000107_250 Hb_010344_030 Hb_010344_030 Hb_001396_240--Hb_010344_030 Hb_004994_350 Hb_004994_350 Hb_001396_240--Hb_004994_350 Hb_004466_050 Hb_004466_050 Hb_001396_240--Hb_004466_050 Hb_052128_010 Hb_052128_010 Hb_001396_240--Hb_052128_010 Hb_005250_010 Hb_005250_010 Hb_001396_240--Hb_005250_010 Hb_000529_130--Hb_004994_350 Hb_000562_070 Hb_000562_070 Hb_000529_130--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_000529_130--Hb_029552_020 Hb_001279_020 Hb_001279_020 Hb_000529_130--Hb_001279_020 Hb_000529_130--Hb_001396_020 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.13245 3.65111 6.71955 5.3944 2.43908 3.21321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94946 1.19143 1.30151 2.31705 9.09855

CAGE analysis