Hb_004466_050

Information

Type -
Description -
Location Contig4466: 77622-86212
Sequence    

Annotation

kegg
ID sot:102604101
description uncharacterized LOC102604101
nr
ID XP_012091232.1
description PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
swissprot
ID P11369
description LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2
trembl
ID I1IFX6
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI3G61082 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rna-directed dna polymerase (reverse transcriptase)

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004466_050 0.0 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
2 Hb_001396_240 0.1082018112 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
3 Hb_052128_010 0.1167643227 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Nicotiana sylvestris]
4 Hb_001408_030 0.1264452784 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
5 Hb_008092_060 0.1445750646 - - -
6 Hb_015531_030 0.1453742497 - - conserved hypothetical protein [Ricinus communis]
7 Hb_164926_010 0.1478430873 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
8 Hb_004837_020 0.1492275402 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
9 Hb_002973_110 0.1520799182 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_008092_050 0.1526223341 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
11 Hb_054865_020 0.1534415008 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
12 Hb_080952_050 0.153826946 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nelumbo nucifera]
13 Hb_004116_160 0.1546267661 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
14 Hb_007576_180 0.1546424149 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
15 Hb_002636_040 0.1558789576 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
16 Hb_001008_050 0.1561753189 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
17 Hb_003462_060 0.1562187543 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
18 Hb_089246_010 0.158424134 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
19 Hb_005271_160 0.1589038108 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
20 Hb_007035_040 0.159041484 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004466_050 Hb_004466_050 Hb_001396_240 Hb_001396_240 Hb_004466_050--Hb_001396_240 Hb_052128_010 Hb_052128_010 Hb_004466_050--Hb_052128_010 Hb_001408_030 Hb_001408_030 Hb_004466_050--Hb_001408_030 Hb_008092_060 Hb_008092_060 Hb_004466_050--Hb_008092_060 Hb_015531_030 Hb_015531_030 Hb_004466_050--Hb_015531_030 Hb_164926_010 Hb_164926_010 Hb_004466_050--Hb_164926_010 Hb_003462_060 Hb_003462_060 Hb_001396_240--Hb_003462_060 Hb_010344_030 Hb_010344_030 Hb_001396_240--Hb_010344_030 Hb_004994_350 Hb_004994_350 Hb_001396_240--Hb_004994_350 Hb_001396_240--Hb_052128_010 Hb_005250_010 Hb_005250_010 Hb_001396_240--Hb_005250_010 Hb_054865_020 Hb_054865_020 Hb_052128_010--Hb_054865_020 Hb_001396_020 Hb_001396_020 Hb_052128_010--Hb_001396_020 Hb_002307_080 Hb_002307_080 Hb_052128_010--Hb_002307_080 Hb_000453_030 Hb_000453_030 Hb_052128_010--Hb_000453_030 Hb_008092_050 Hb_008092_050 Hb_001408_030--Hb_008092_050 Hb_001408_030--Hb_008092_060 Hb_001437_120 Hb_001437_120 Hb_001408_030--Hb_001437_120 Hb_003929_220 Hb_003929_220 Hb_001408_030--Hb_003929_220 Hb_004254_100 Hb_004254_100 Hb_001408_030--Hb_004254_100 Hb_001408_030--Hb_001396_240 Hb_008092_060--Hb_008092_050 Hb_008092_060--Hb_001437_120 Hb_000031_230 Hb_000031_230 Hb_008092_060--Hb_000031_230 Hb_007192_090 Hb_007192_090 Hb_008092_060--Hb_007192_090 Hb_002276_070 Hb_002276_070 Hb_008092_060--Hb_002276_070 Hb_001959_240 Hb_001959_240 Hb_015531_030--Hb_001959_240 Hb_015531_030--Hb_164926_010 Hb_002105_010 Hb_002105_010 Hb_015531_030--Hb_002105_010 Hb_015531_030--Hb_001408_030 Hb_015531_030--Hb_008092_050 Hb_000803_220 Hb_000803_220 Hb_164926_010--Hb_000803_220 Hb_007894_190 Hb_007894_190 Hb_164926_010--Hb_007894_190 Hb_002005_040 Hb_002005_040 Hb_164926_010--Hb_002005_040 Hb_005618_150 Hb_005618_150 Hb_164926_010--Hb_005618_150 Hb_004837_210 Hb_004837_210 Hb_164926_010--Hb_004837_210 Hb_007576_180 Hb_007576_180 Hb_164926_010--Hb_007576_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197991 0.237992 0.418945 0.204215 0.102994 0.355662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0329537 0.07132 0.0374632 0.205238 0.613239

CAGE analysis