Hb_000031_230

Information

Type -
Description -
Location Contig31: 181778-187348
Sequence    

Annotation

kegg
ID pop:POPTR_0018s03380g
description POPTRDRAFT_779207; cyclic nucleotide-regulated ion channel family protein
nr
ID XP_012076359.1
description PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
swissprot
ID Q9SJA4
description Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2
trembl
ID B9ILD6
description Cyclic nucleotide-regulated ion channel family protein OS=Populus trichocarpa GN=POPTR_0018s03380g PE=4 SV=1
Gene Ontology
ID GO:0005249
description probable cyclic nucleotide-gated ion channel 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32800: 182196-187273 , PASA_asmbl_32801: 182236-183145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_230 0.0 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
2 Hb_003053_050 0.0897243284 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
3 Hb_000997_100 0.1019716211 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
4 Hb_007192_090 0.1178272308 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
5 Hb_008092_060 0.1198707646 - - -
6 Hb_001250_020 0.1228532484 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
7 Hb_001408_030 0.1254549701 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
8 Hb_003734_080 0.1286045722 - - myosin vIII, putative [Ricinus communis]
9 Hb_006916_030 0.1334425777 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
10 Hb_008092_050 0.1361943223 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
11 Hb_001396_240 0.136236965 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
12 Hb_004994_350 0.1395596512 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
13 Hb_002986_070 0.1404679419 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
14 Hb_002942_130 0.1409573398 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
15 Hb_010344_030 0.1441720631 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001437_120 0.1441781066 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
17 Hb_000529_130 0.1455269516 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
18 Hb_000815_230 0.1458379933 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000964_170 0.1466121462 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
20 Hb_000762_110 0.1476817585 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000031_230 Hb_000031_230 Hb_003053_050 Hb_003053_050 Hb_000031_230--Hb_003053_050 Hb_000997_100 Hb_000997_100 Hb_000031_230--Hb_000997_100 Hb_007192_090 Hb_007192_090 Hb_000031_230--Hb_007192_090 Hb_008092_060 Hb_008092_060 Hb_000031_230--Hb_008092_060 Hb_001250_020 Hb_001250_020 Hb_000031_230--Hb_001250_020 Hb_001408_030 Hb_001408_030 Hb_000031_230--Hb_001408_030 Hb_010344_030 Hb_010344_030 Hb_003053_050--Hb_010344_030 Hb_000815_230 Hb_000815_230 Hb_003053_050--Hb_000815_230 Hb_003053_050--Hb_000997_100 Hb_002053_050 Hb_002053_050 Hb_003053_050--Hb_002053_050 Hb_000336_200 Hb_000336_200 Hb_003053_050--Hb_000336_200 Hb_000529_130 Hb_000529_130 Hb_000997_100--Hb_000529_130 Hb_006422_020 Hb_006422_020 Hb_000997_100--Hb_006422_020 Hb_003734_080 Hb_003734_080 Hb_000997_100--Hb_003734_080 Hb_003849_160 Hb_003849_160 Hb_000997_100--Hb_003849_160 Hb_004994_350 Hb_004994_350 Hb_000997_100--Hb_004994_350 Hb_001472_160 Hb_001472_160 Hb_007192_090--Hb_001472_160 Hb_001828_120 Hb_001828_120 Hb_007192_090--Hb_001828_120 Hb_007769_040 Hb_007769_040 Hb_007192_090--Hb_007769_040 Hb_002973_110 Hb_002973_110 Hb_007192_090--Hb_002973_110 Hb_025477_050 Hb_025477_050 Hb_007192_090--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007192_090--Hb_000589_110 Hb_008092_060--Hb_001408_030 Hb_008092_050 Hb_008092_050 Hb_008092_060--Hb_008092_050 Hb_001437_120 Hb_001437_120 Hb_008092_060--Hb_001437_120 Hb_008092_060--Hb_007192_090 Hb_002276_070 Hb_002276_070 Hb_008092_060--Hb_002276_070 Hb_018043_020 Hb_018043_020 Hb_001250_020--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_001250_020--Hb_008616_040 Hb_003029_140 Hb_003029_140 Hb_001250_020--Hb_003029_140 Hb_001109_160 Hb_001109_160 Hb_001250_020--Hb_001109_160 Hb_000762_110 Hb_000762_110 Hb_001250_020--Hb_000762_110 Hb_010984_010 Hb_010984_010 Hb_001250_020--Hb_010984_010 Hb_001408_030--Hb_008092_050 Hb_001408_030--Hb_001437_120 Hb_003929_220 Hb_003929_220 Hb_001408_030--Hb_003929_220 Hb_004254_100 Hb_004254_100 Hb_001408_030--Hb_004254_100 Hb_001396_240 Hb_001396_240 Hb_001408_030--Hb_001396_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4747 12.2674 10.4704 11.3797 5.60018 8.48554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19183 1.43912 1.62124 3.34368 28.958

CAGE analysis