Hb_001437_120

Information

Type -
Description -
Location Contig1437: 96750-100396
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22340g
description RUBISCO SUBUNIT BINDING-protein ALPHA SUBUNIT
nr
ID XP_012064751.1
description PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
swissprot
ID P08926
description RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2
trembl
ID A0A067L6E9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05469 PE=3 SV=1
Gene Ontology
ID GO:0005739
description ru large subunit-binding protein subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11523: 96707-100529
cDNA
(Sanger)
(ID:Location)		 031_I04.ab1: 96707-98480 , 045_D20.ab1: 96739-98483 , 052_E08.ab1: 96739-98435

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_120 0.0 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
2 Hb_028707_110 0.0669853788 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
3 Hb_001408_030 0.077009911 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
4 Hb_002276_070 0.0929738395 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
5 Hb_008092_060 0.1051481895 - - -
6 Hb_000997_140 0.1075516993 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
7 Hb_003929_220 0.1100721525 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_002942_130 0.1103287881 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
9 Hb_010488_010 0.1110622138 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
10 Hb_008092_050 0.1142820318 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
11 Hb_007192_090 0.1150832368 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
12 Hb_002495_060 0.1163791946 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_010984_010 0.1165491453 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004254_100 0.1192354535 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
15 Hb_010757_030 0.1223267944 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_004785_070 0.1242681871 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
17 Hb_001472_160 0.1245667064 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_002740_190 0.1261440929 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
19 Hb_000069_490 0.1271942325 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004225_040 0.1278127504 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]

Gene co-expression network

sample Hb_001437_120 Hb_001437_120 Hb_028707_110 Hb_028707_110 Hb_001437_120--Hb_028707_110 Hb_001408_030 Hb_001408_030 Hb_001437_120--Hb_001408_030 Hb_002276_070 Hb_002276_070 Hb_001437_120--Hb_002276_070 Hb_008092_060 Hb_008092_060 Hb_001437_120--Hb_008092_060 Hb_000997_140 Hb_000997_140 Hb_001437_120--Hb_000997_140 Hb_003929_220 Hb_003929_220 Hb_001437_120--Hb_003929_220 Hb_028707_110--Hb_000997_140 Hb_000069_490 Hb_000069_490 Hb_028707_110--Hb_000069_490 Hb_010757_030 Hb_010757_030 Hb_028707_110--Hb_010757_030 Hb_003077_130 Hb_003077_130 Hb_028707_110--Hb_003077_130 Hb_028707_110--Hb_003929_220 Hb_008092_050 Hb_008092_050 Hb_001408_030--Hb_008092_050 Hb_001408_030--Hb_008092_060 Hb_001408_030--Hb_003929_220 Hb_004254_100 Hb_004254_100 Hb_001408_030--Hb_004254_100 Hb_001396_240 Hb_001396_240 Hb_001408_030--Hb_001396_240 Hb_002495_060 Hb_002495_060 Hb_002276_070--Hb_002495_060 Hb_002368_070 Hb_002368_070 Hb_002276_070--Hb_002368_070 Hb_002276_070--Hb_028707_110 Hb_004785_070 Hb_004785_070 Hb_002276_070--Hb_004785_070 Hb_010488_010 Hb_010488_010 Hb_002276_070--Hb_010488_010 Hb_008092_060--Hb_008092_050 Hb_000031_230 Hb_000031_230 Hb_008092_060--Hb_000031_230 Hb_007192_090 Hb_007192_090 Hb_008092_060--Hb_007192_090 Hb_008092_060--Hb_002276_070 Hb_000997_140--Hb_003077_130 Hb_003029_140 Hb_003029_140 Hb_000997_140--Hb_003029_140 Hb_000997_140--Hb_003929_220 Hb_018043_020 Hb_018043_020 Hb_000997_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_000997_140--Hb_001250_020 Hb_000771_170 Hb_000771_170 Hb_003929_220--Hb_000771_170 Hb_001472_160 Hb_001472_160 Hb_003929_220--Hb_001472_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.3845 130.055 177.612 84.6454 150.42 110.214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0858 26.5648 32.3703 95.656 484.16

CAGE analysis