Hb_000997_140

Information

Type -
Description -
Location Contig997: 136697-143252
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08770g
description POPTRDRAFT_1090119; hypothetical protein
nr
ID XP_012069764.1
description PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
swissprot
ID Q9FYT6
description Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
trembl
ID A0A067KZA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02276 PE=4 SV=1
Gene Ontology
ID GO:0003723
description chloroplastic group iia intron splicing facilitator chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64862: 136995-139440 , PASA_asmbl_64863: 139454-142962 , PASA_asmbl_64865: 139947-140114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_140 0.0 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
2 Hb_028707_110 0.0814509565 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
3 Hb_003077_130 0.0946753063 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
4 Hb_003029_140 0.09563464 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
5 Hb_003929_220 0.0980183848 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_018043_020 0.0987449022 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
7 Hb_001250_020 0.1025705607 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
8 Hb_000069_490 0.1064006412 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001437_120 0.1075516993 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
10 Hb_024714_080 0.1154008156 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
11 Hb_015778_060 0.1155710681 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
12 Hb_159809_090 0.1159801597 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
13 Hb_010984_010 0.1206270568 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001832_040 0.1220068765 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010757_030 0.1227575958 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_014361_110 0.127690388 - - RNA binding protein, putative [Ricinus communis]
17 Hb_004785_070 0.1285843513 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
18 Hb_000803_220 0.1301975982 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
19 Hb_007576_180 0.1302666566 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
20 Hb_007192_090 0.1324070945 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]

Gene co-expression network

sample Hb_000997_140 Hb_000997_140 Hb_028707_110 Hb_028707_110 Hb_000997_140--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000997_140--Hb_003077_130 Hb_003029_140 Hb_003029_140 Hb_000997_140--Hb_003029_140 Hb_003929_220 Hb_003929_220 Hb_000997_140--Hb_003929_220 Hb_018043_020 Hb_018043_020 Hb_000997_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_000997_140--Hb_001250_020 Hb_001437_120 Hb_001437_120 Hb_028707_110--Hb_001437_120 Hb_000069_490 Hb_000069_490 Hb_028707_110--Hb_000069_490 Hb_010757_030 Hb_010757_030 Hb_028707_110--Hb_010757_030 Hb_028707_110--Hb_003077_130 Hb_028707_110--Hb_003929_220 Hb_024714_080 Hb_024714_080 Hb_003077_130--Hb_024714_080 Hb_003077_130--Hb_000069_490 Hb_004785_070 Hb_004785_070 Hb_003077_130--Hb_004785_070 Hb_003077_130--Hb_010757_030 Hb_003029_140--Hb_018043_020 Hb_003029_140--Hb_001250_020 Hb_008616_040 Hb_008616_040 Hb_003029_140--Hb_008616_040 Hb_021409_190 Hb_021409_190 Hb_003029_140--Hb_021409_190 Hb_052946_010 Hb_052946_010 Hb_003029_140--Hb_052946_010 Hb_000771_170 Hb_000771_170 Hb_003929_220--Hb_000771_170 Hb_001408_030 Hb_001408_030 Hb_003929_220--Hb_001408_030 Hb_001472_160 Hb_001472_160 Hb_003929_220--Hb_001472_160 Hb_003929_220--Hb_001437_120 Hb_159809_090 Hb_159809_090 Hb_018043_020--Hb_159809_090 Hb_018043_020--Hb_001250_020 Hb_018043_020--Hb_008616_040 Hb_001425_010 Hb_001425_010 Hb_018043_020--Hb_001425_010 Hb_004629_030 Hb_004629_030 Hb_018043_020--Hb_004629_030 Hb_001250_020--Hb_008616_040 Hb_001109_160 Hb_001109_160 Hb_001250_020--Hb_001109_160 Hb_000762_110 Hb_000762_110 Hb_001250_020--Hb_000762_110 Hb_010984_010 Hb_010984_010 Hb_001250_020--Hb_010984_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26269 9.01927 9.6004 3.75058 3.9613 4.33846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.973 1.88535 2.14473 5.51084 29.8746

CAGE analysis