Hb_008616_040

Information

Type -
Description -
Location Contig8616: 55445-57821
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06870g
description POPTRDRAFT_576481; 33 kDa ribonucleoprotein
nr
ID XP_012074296.1
description PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
swissprot
ID Q39061
description RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1
trembl
ID A0A067KW74
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08743 PE=4 SV=1
Gene Ontology
ID GO:0000166
description 33 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60829: 55479-57856
cDNA
(Sanger)
(ID:Location)		 017_C08.ab1: 55482-56812

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008616_040 0.0 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
2 Hb_018043_020 0.0713503786 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
3 Hb_001250_020 0.0715318365 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
4 Hb_003029_140 0.0758186927 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
5 Hb_000976_130 0.0791421211 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
6 Hb_021409_190 0.0844581437 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
7 Hb_010984_010 0.0855662724 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001109_160 0.0860467379 - - DNA binding protein, putative [Ricinus communis]
9 Hb_001425_010 0.0881948463 - - sugar transporter, putative [Ricinus communis]
10 Hb_006916_030 0.10222164 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
11 Hb_159809_090 0.1041821875 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
12 Hb_004041_030 0.1051405702 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
13 Hb_000579_040 0.1107857368 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
14 Hb_052946_010 0.1137432313 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
15 Hb_000762_110 0.1141655183 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
16 Hb_004242_170 0.1150278714 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
17 Hb_002150_020 0.1154547835 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_001053_020 0.1157831958 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
19 Hb_003142_010 0.1163553801 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
20 Hb_000005_100 0.1170665847 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008616_040 Hb_008616_040 Hb_018043_020 Hb_018043_020 Hb_008616_040--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_008616_040--Hb_001250_020 Hb_003029_140 Hb_003029_140 Hb_008616_040--Hb_003029_140 Hb_000976_130 Hb_000976_130 Hb_008616_040--Hb_000976_130 Hb_021409_190 Hb_021409_190 Hb_008616_040--Hb_021409_190 Hb_010984_010 Hb_010984_010 Hb_008616_040--Hb_010984_010 Hb_018043_020--Hb_003029_140 Hb_159809_090 Hb_159809_090 Hb_018043_020--Hb_159809_090 Hb_018043_020--Hb_001250_020 Hb_001425_010 Hb_001425_010 Hb_018043_020--Hb_001425_010 Hb_004629_030 Hb_004629_030 Hb_018043_020--Hb_004629_030 Hb_001250_020--Hb_003029_140 Hb_001109_160 Hb_001109_160 Hb_001250_020--Hb_001109_160 Hb_000762_110 Hb_000762_110 Hb_001250_020--Hb_000762_110 Hb_001250_020--Hb_010984_010 Hb_003029_140--Hb_021409_190 Hb_000997_140 Hb_000997_140 Hb_003029_140--Hb_000997_140 Hb_052946_010 Hb_052946_010 Hb_003029_140--Hb_052946_010 Hb_001053_020 Hb_001053_020 Hb_000976_130--Hb_001053_020 Hb_000005_100 Hb_000005_100 Hb_000976_130--Hb_000005_100 Hb_000976_130--Hb_001250_020 Hb_004242_170 Hb_004242_170 Hb_000976_130--Hb_004242_170 Hb_012799_190 Hb_012799_190 Hb_000976_130--Hb_012799_190 Hb_000640_260 Hb_000640_260 Hb_021409_190--Hb_000640_260 Hb_021409_190--Hb_018043_020 Hb_021409_190--Hb_001109_160 Hb_002811_190 Hb_002811_190 Hb_021409_190--Hb_002811_190 Hb_000803_220 Hb_000803_220 Hb_010984_010--Hb_000803_220 Hb_000803_240 Hb_000803_240 Hb_010984_010--Hb_000803_240 Hb_007576_180 Hb_007576_180 Hb_010984_010--Hb_007576_180 Hb_010984_010--Hb_018043_020 Hb_016760_010 Hb_016760_010 Hb_010984_010--Hb_016760_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.23596 14.7685 24.8922 21.4375 6.5122 6.20298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57631 5.15983 3.92952 15.0003 65.4061

CAGE analysis