Hb_004242_170

Information

Type -
Description -
Location Contig4242: 152652-157574
Sequence    

Annotation

kegg
ID rcu:RCOM_0180410
description serine/threonine-specific protein kinase, putative (EC:2.7.11.25)
nr
ID AKE50598.1
description calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
swissprot
ID Q9LFV3
description Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730 OS=Arabidopsis thaliana GN=At5g15730 PE=2 SV=1
trembl
ID A0A067KS30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00788 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable leucine-rich repeat receptor-like serine threonine-protein kinase at5g15730

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41969: 152669-157383 , PASA_asmbl_41970: 157387-157553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_170 0.0 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
2 Hb_000441_050 0.0573848704 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
3 Hb_001053_020 0.0736484433 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
4 Hb_000108_150 0.0907634169 - - alpha/beta hydrolase, putative [Ricinus communis]
5 Hb_005977_060 0.0931507962 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001348_090 0.0941016195 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
7 Hb_009692_040 0.0957709237 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002374_450 0.0969100036 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
9 Hb_071079_020 0.0999489287 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
10 Hb_012799_190 0.1062473701 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
11 Hb_002817_040 0.110809314 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
12 Hb_000976_130 0.1116723376 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
13 Hb_035834_010 0.1120075882 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000347_190 0.1126860555 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
15 Hb_032631_030 0.1137598184 - - phosphatidic acid phosphatase, putative [Ricinus communis]
16 Hb_002044_160 0.1142614534 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
17 Hb_008616_040 0.1150278714 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
18 Hb_004055_160 0.1155694682 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
19 Hb_158092_100 0.1172414207 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
20 Hb_007982_040 0.117448483 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004242_170 Hb_004242_170 Hb_000441_050 Hb_000441_050 Hb_004242_170--Hb_000441_050 Hb_001053_020 Hb_001053_020 Hb_004242_170--Hb_001053_020 Hb_000108_150 Hb_000108_150 Hb_004242_170--Hb_000108_150 Hb_005977_060 Hb_005977_060 Hb_004242_170--Hb_005977_060 Hb_001348_090 Hb_001348_090 Hb_004242_170--Hb_001348_090 Hb_009692_040 Hb_009692_040 Hb_004242_170--Hb_009692_040 Hb_000441_050--Hb_005977_060 Hb_000441_050--Hb_001053_020 Hb_001365_020 Hb_001365_020 Hb_000441_050--Hb_001365_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_005276_070 Hb_005276_070 Hb_000441_050--Hb_005276_070 Hb_000042_050 Hb_000042_050 Hb_001053_020--Hb_000042_050 Hb_000976_130 Hb_000976_130 Hb_001053_020--Hb_000976_130 Hb_001252_030 Hb_001252_030 Hb_001053_020--Hb_001252_030 Hb_001053_020--Hb_009692_040 Hb_000061_250 Hb_000061_250 Hb_000108_150--Hb_000061_250 Hb_000045_050 Hb_000045_050 Hb_000108_150--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_005181_120 Hb_005181_120 Hb_000108_150--Hb_005181_120 Hb_000264_280 Hb_000264_280 Hb_000108_150--Hb_000264_280 Hb_007904_060 Hb_007904_060 Hb_000108_150--Hb_007904_060 Hb_005977_060--Hb_005276_070 Hb_005977_060--Hb_009692_040 Hb_005977_060--Hb_001365_020 Hb_005977_060--Hb_001053_020 Hb_002005_040 Hb_002005_040 Hb_001348_090--Hb_002005_040 Hb_001348_090--Hb_002374_450 Hb_004055_160 Hb_004055_160 Hb_001348_090--Hb_004055_160 Hb_024677_010 Hb_024677_010 Hb_001348_090--Hb_024677_010 Hb_001348_090--Hb_000441_050 Hb_007982_040 Hb_007982_040 Hb_009692_040--Hb_007982_040 Hb_032631_030 Hb_032631_030 Hb_009692_040--Hb_032631_030 Hb_009692_040--Hb_000441_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87179 4.13119 14.515 15.5257 2.93795 2.53784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74493 1.63989 1.11895 5.27581 29.1995

CAGE analysis