Hb_024677_010

Information

Type -
Description -
Location Contig24677: 6520-8904
Sequence    

Annotation

kegg
ID rcu:RCOM_0808700
description superoxide dismutase [fe], putative (EC:1.15.1.1)
nr
ID XP_002520915.1
description superoxide dismutase [fe], putative [Ricinus communis]
swissprot
ID Q9FMX0
description Superoxide dismutase [Fe] 3, chloroplastic OS=Arabidopsis thaliana GN=FSD3 PE=1 SV=1
trembl
ID B9S4J6
description Superoxide dismutase OS=Ricinus communis GN=RCOM_0808700 PE=4 SV=1
Gene Ontology
ID GO:0042644
description superoxide dismutase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25621: 6485-24236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024677_010 0.0 - - superoxide dismutase [fe], putative [Ricinus communis]
2 Hb_001348_090 0.0969141248 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
3 Hb_002374_450 0.1086181923 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
4 Hb_002005_040 0.1138373345 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000516_080 0.1196791716 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
6 Hb_001250_020 0.1198766025 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
7 Hb_007765_130 0.1213359833 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
8 Hb_008616_040 0.1216887785 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
9 Hb_001053_020 0.123476786 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
10 Hb_000042_050 0.1262989858 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
11 Hb_000005_100 0.1265524118 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
12 Hb_022425_050 0.1279246685 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
13 Hb_000951_120 0.131566592 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
14 Hb_001365_020 0.1322766143 - - hypothetical protein PRUPE_ppa000927mg [Prunus persica]
15 Hb_018043_020 0.1325533792 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
16 Hb_010984_010 0.134318177 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001365_030 0.1346103035 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
18 Hb_004223_270 0.1350989289 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
19 Hb_001109_160 0.1363271598 - - DNA binding protein, putative [Ricinus communis]
20 Hb_000441_050 0.1386915588 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]

Gene co-expression network

sample Hb_024677_010 Hb_024677_010 Hb_001348_090 Hb_001348_090 Hb_024677_010--Hb_001348_090 Hb_002374_450 Hb_002374_450 Hb_024677_010--Hb_002374_450 Hb_002005_040 Hb_002005_040 Hb_024677_010--Hb_002005_040 Hb_000516_080 Hb_000516_080 Hb_024677_010--Hb_000516_080 Hb_001250_020 Hb_001250_020 Hb_024677_010--Hb_001250_020 Hb_007765_130 Hb_007765_130 Hb_024677_010--Hb_007765_130 Hb_001348_090--Hb_002005_040 Hb_001348_090--Hb_002374_450 Hb_004055_160 Hb_004055_160 Hb_001348_090--Hb_004055_160 Hb_004242_170 Hb_004242_170 Hb_001348_090--Hb_004242_170 Hb_000441_050 Hb_000441_050 Hb_001348_090--Hb_000441_050 Hb_000414_080 Hb_000414_080 Hb_002374_450--Hb_000414_080 Hb_002374_450--Hb_000441_050 Hb_002374_450--Hb_004242_170 Hb_002044_160 Hb_002044_160 Hb_002374_450--Hb_002044_160 Hb_000951_120 Hb_000951_120 Hb_002374_450--Hb_000951_120 Hb_002005_040--Hb_004055_160 Hb_005116_100 Hb_005116_100 Hb_002005_040--Hb_005116_100 Hb_002005_040--Hb_002044_160 Hb_000684_430 Hb_000684_430 Hb_002005_040--Hb_000684_430 Hb_001269_500 Hb_001269_500 Hb_002005_040--Hb_001269_500 Hb_005181_120 Hb_005181_120 Hb_000516_080--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_000516_080--Hb_010098_040 Hb_007982_040 Hb_007982_040 Hb_000516_080--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_000516_080--Hb_000679_080 Hb_000516_080--Hb_002374_450 Hb_002811_250 Hb_002811_250 Hb_000516_080--Hb_002811_250 Hb_018043_020 Hb_018043_020 Hb_001250_020--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_001250_020--Hb_008616_040 Hb_003029_140 Hb_003029_140 Hb_001250_020--Hb_003029_140 Hb_001109_160 Hb_001109_160 Hb_001250_020--Hb_001109_160 Hb_000762_110 Hb_000762_110 Hb_001250_020--Hb_000762_110 Hb_010984_010 Hb_010984_010 Hb_001250_020--Hb_010984_010 Hb_000042_050 Hb_000042_050 Hb_007765_130--Hb_000042_050 Hb_003055_070 Hb_003055_070 Hb_007765_130--Hb_003055_070 Hb_001365_030 Hb_001365_030 Hb_007765_130--Hb_001365_030 Hb_000005_100 Hb_000005_100 Hb_007765_130--Hb_000005_100 Hb_007765_130--Hb_000679_080 Hb_000093_140 Hb_000093_140 Hb_007765_130--Hb_000093_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.754277 3.81116 8.87635 5.39754 0.764498 3.27084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11073 0.714222 0.832771 3.61243 15.0505

CAGE analysis