Hb_000516_080

Information

Type -
Description -
Location Contig516: 140371-147031
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24810g
description POPTRDRAFT_822693; hypothetical protein
nr
ID XP_002315423.1
description hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HVK6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s24810g PE=4 SV=1
Gene Ontology
ID GO:0005886
description nuclear transport factor 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46506: 140444-144673 , PASA_asmbl_46507: 140386-146545 , PASA_asmbl_46508: 140355-146595
cDNA
(Sanger)
(ID:Location)		 022_F15.ab1: 140488-146543 , 032_G01.ab1: 140387-146595 , 053_O17.ab1: 140503-146595

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000516_080 0.0 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
2 Hb_005181_120 0.0643060227 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_010098_040 0.0786247267 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
4 Hb_007982_040 0.0897609497 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
5 Hb_000679_080 0.0984187254 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
6 Hb_002374_450 0.1039743895 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
7 Hb_002811_250 0.1077816615 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
8 Hb_002044_160 0.1084679697 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
9 Hb_003053_070 0.1088399687 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
10 Hb_000005_100 0.1103305599 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
11 Hb_000441_050 0.1127065834 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
12 Hb_002005_040 0.1127459776 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000108_150 0.1138006352 - - alpha/beta hydrolase, putative [Ricinus communis]
14 Hb_001053_020 0.116569895 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
15 Hb_004223_270 0.1167934788 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
16 Hb_005784_030 0.1176131646 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
17 Hb_000684_200 0.1176700759 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
18 Hb_001365_030 0.1177436826 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
19 Hb_005977_060 0.1183300562 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000803_170 0.1188084021 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]

Gene co-expression network

sample Hb_000516_080 Hb_000516_080 Hb_005181_120 Hb_005181_120 Hb_000516_080--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_000516_080--Hb_010098_040 Hb_007982_040 Hb_007982_040 Hb_000516_080--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_000516_080--Hb_000679_080 Hb_002374_450 Hb_002374_450 Hb_000516_080--Hb_002374_450 Hb_002811_250 Hb_002811_250 Hb_000516_080--Hb_002811_250 Hb_005181_120--Hb_010098_040 Hb_005181_120--Hb_000679_080 Hb_005181_120--Hb_002811_250 Hb_005181_120--Hb_007982_040 Hb_000108_150 Hb_000108_150 Hb_005181_120--Hb_000108_150 Hb_010098_040--Hb_002811_250 Hb_010098_040--Hb_007982_040 Hb_010098_040--Hb_000679_080 Hb_000684_200 Hb_000684_200 Hb_010098_040--Hb_000684_200 Hb_010721_020 Hb_010721_020 Hb_007982_040--Hb_010721_020 Hb_009692_040 Hb_009692_040 Hb_007982_040--Hb_009692_040 Hb_000193_220 Hb_000193_220 Hb_007982_040--Hb_000193_220 Hb_000679_080--Hb_002811_250 Hb_003416_020 Hb_003416_020 Hb_000679_080--Hb_003416_020 Hb_000679_080--Hb_007982_040 Hb_001348_090 Hb_001348_090 Hb_002374_450--Hb_001348_090 Hb_000414_080 Hb_000414_080 Hb_002374_450--Hb_000414_080 Hb_000441_050 Hb_000441_050 Hb_002374_450--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_002374_450--Hb_004242_170 Hb_002044_160 Hb_002044_160 Hb_002374_450--Hb_002044_160 Hb_000951_120 Hb_000951_120 Hb_002374_450--Hb_000951_120 Hb_002811_250--Hb_000193_220 Hb_010557_010 Hb_010557_010 Hb_002811_250--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_002811_250--Hb_000803_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.04739 11.6299 37.449 20.1917 3.0831 4.69757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.71744 2.32215 5.85558 7.86567 57.9947

CAGE analysis