Hb_000441_050

Information

Type -
Description -
Location Contig441: 32682-60632
Sequence    

Annotation

kegg
ID pop:POPTR_0011s09250g
description POPTRDRAFT_234855; hypothetical protein
nr
ID XP_012075639.1
description PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
swissprot
ID F4IIU4
description 187-kDa microtubule-associated protein AIR9 OS=Arabidopsis thaliana GN=AIR9 PE=1 SV=1
trembl
ID A0A067KSW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09232 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42616: 32706-60553 , PASA_asmbl_42617: 32778-43111 , PASA_asmbl_42618: 41642-41843 , PASA_asmbl_42619: 43120-44458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000441_050 0.0 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
2 Hb_005977_060 0.0563589724 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004242_170 0.0573848704 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
4 Hb_001053_020 0.0890094496 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
5 Hb_001365_020 0.0938603411 - - hypothetical protein PRUPE_ppa000927mg [Prunus persica]
6 Hb_002374_450 0.0959499811 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
7 Hb_005276_070 0.0975430229 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
8 Hb_000612_090 0.1003669692 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
9 Hb_001348_090 0.1013153276 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
10 Hb_009692_040 0.1021425977 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000108_150 0.1031784657 - - alpha/beta hydrolase, putative [Ricinus communis]
12 Hb_032631_030 0.1051254812 - - phosphatidic acid phosphatase, putative [Ricinus communis]
13 Hb_035834_010 0.1056735883 - - zinc finger protein, putative [Ricinus communis]
14 Hb_002044_160 0.1068427906 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
15 Hb_000163_110 0.1070106416 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
16 Hb_005181_120 0.110598708 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001365_010 0.1119036597 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
18 Hb_000975_050 0.1120193079 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
19 Hb_000516_080 0.1127065834 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
20 Hb_002817_040 0.1145527794 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000441_050 Hb_000441_050 Hb_005977_060 Hb_005977_060 Hb_000441_050--Hb_005977_060 Hb_004242_170 Hb_004242_170 Hb_000441_050--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_000441_050--Hb_001053_020 Hb_001365_020 Hb_001365_020 Hb_000441_050--Hb_001365_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_005276_070 Hb_005276_070 Hb_000441_050--Hb_005276_070 Hb_005977_060--Hb_005276_070 Hb_005977_060--Hb_004242_170 Hb_009692_040 Hb_009692_040 Hb_005977_060--Hb_009692_040 Hb_005977_060--Hb_001365_020 Hb_005977_060--Hb_001053_020 Hb_004242_170--Hb_001053_020 Hb_000108_150 Hb_000108_150 Hb_004242_170--Hb_000108_150 Hb_001348_090 Hb_001348_090 Hb_004242_170--Hb_001348_090 Hb_004242_170--Hb_009692_040 Hb_000042_050 Hb_000042_050 Hb_001053_020--Hb_000042_050 Hb_000976_130 Hb_000976_130 Hb_001053_020--Hb_000976_130 Hb_001252_030 Hb_001252_030 Hb_001053_020--Hb_001252_030 Hb_001053_020--Hb_009692_040 Hb_001365_010 Hb_001365_010 Hb_001365_020--Hb_001365_010 Hb_003053_070 Hb_003053_070 Hb_001365_020--Hb_003053_070 Hb_000163_110 Hb_000163_110 Hb_001365_020--Hb_000163_110 Hb_001365_020--Hb_005276_070 Hb_002374_450--Hb_001348_090 Hb_000414_080 Hb_000414_080 Hb_002374_450--Hb_000414_080 Hb_002374_450--Hb_004242_170 Hb_002044_160 Hb_002044_160 Hb_002374_450--Hb_002044_160 Hb_000951_120 Hb_000951_120 Hb_002374_450--Hb_000951_120 Hb_002662_110 Hb_002662_110 Hb_005276_070--Hb_002662_110 Hb_005276_070--Hb_003053_070 Hb_010632_020 Hb_010632_020 Hb_005276_070--Hb_010632_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.58994 6.61584 26.7642 25.363 4.0008 3.59515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80641 2.21403 3.57985 11.5814 51.9592

CAGE analysis