Hb_005276_070

Information

Type -
Description -
Location Contig5276: 69578-71203
Sequence    

Annotation

kegg
ID rcu:RCOM_0557810
description leucine rich repeat-containing protein, putative
nr
ID XP_012092245.1
description PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
swissprot
ID Q9LE82
description RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1
trembl
ID A0A067JN61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21931 PE=4 SV=1
Gene Ontology
ID GO:0005886
description ran gtpase-activating protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47087: 68320-71627 , PASA_asmbl_47088: 68969-69212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_070 0.0 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
2 Hb_005977_060 0.07867125 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002662_110 0.0900020893 - - Kinesin heavy chain, putative [Ricinus communis]
4 Hb_000441_050 0.0975430229 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
5 Hb_001365_020 0.1053856469 - - hypothetical protein PRUPE_ppa000927mg [Prunus persica]
6 Hb_003053_070 0.1109715025 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
7 Hb_010632_020 0.1129046284 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
8 Hb_001360_030 0.1141747089 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
9 Hb_007765_130 0.1157820505 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
10 Hb_002235_110 0.1158035113 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
11 Hb_000612_090 0.1162652439 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
12 Hb_001365_030 0.1182517548 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
13 Hb_074197_030 0.120520221 - - unnamed protein product [Vitis vinifera]
14 Hb_002374_450 0.1215703502 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
15 Hb_000163_110 0.1259196556 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
16 Hb_032631_030 0.1272607504 - - phosphatidic acid phosphatase, putative [Ricinus communis]
17 Hb_004242_170 0.1272669474 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
18 Hb_001153_100 0.1282417874 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
19 Hb_002949_020 0.1302413497 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
20 Hb_172426_060 0.1308014166 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_005276_070 Hb_005276_070 Hb_005977_060 Hb_005977_060 Hb_005276_070--Hb_005977_060 Hb_002662_110 Hb_002662_110 Hb_005276_070--Hb_002662_110 Hb_000441_050 Hb_000441_050 Hb_005276_070--Hb_000441_050 Hb_001365_020 Hb_001365_020 Hb_005276_070--Hb_001365_020 Hb_003053_070 Hb_003053_070 Hb_005276_070--Hb_003053_070 Hb_010632_020 Hb_010632_020 Hb_005276_070--Hb_010632_020 Hb_005977_060--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_005977_060--Hb_004242_170 Hb_009692_040 Hb_009692_040 Hb_005977_060--Hb_009692_040 Hb_005977_060--Hb_001365_020 Hb_001053_020 Hb_001053_020 Hb_005977_060--Hb_001053_020 Hb_004994_330 Hb_004994_330 Hb_002662_110--Hb_004994_330 Hb_000612_090 Hb_000612_090 Hb_002662_110--Hb_000612_090 Hb_003416_020 Hb_003416_020 Hb_002662_110--Hb_003416_020 Hb_000679_080 Hb_000679_080 Hb_002662_110--Hb_000679_080 Hb_032631_030 Hb_032631_030 Hb_002662_110--Hb_032631_030 Hb_000441_050--Hb_004242_170 Hb_000441_050--Hb_001053_020 Hb_000441_050--Hb_001365_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_001365_010 Hb_001365_010 Hb_001365_020--Hb_001365_010 Hb_001365_020--Hb_003053_070 Hb_000163_110 Hb_000163_110 Hb_001365_020--Hb_000163_110 Hb_004837_100 Hb_004837_100 Hb_003053_070--Hb_004837_100 Hb_000684_200 Hb_000684_200 Hb_003053_070--Hb_000684_200 Hb_004162_270 Hb_004162_270 Hb_003053_070--Hb_004162_270 Hb_000516_080 Hb_000516_080 Hb_003053_070--Hb_000516_080 Hb_001365_030 Hb_001365_030 Hb_003053_070--Hb_001365_030 Hb_010632_020--Hb_001365_030 Hb_001360_030 Hb_001360_030 Hb_010632_020--Hb_001360_030 Hb_000940_030 Hb_000940_030 Hb_010632_020--Hb_000940_030 Hb_010632_020--Hb_002374_450 Hb_010632_020--Hb_003053_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19512 2.65078 10.6984 9.7569 0.426327 0.828679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.654932 0.470467 0.886517 5.29731 16.3157

CAGE analysis