Hb_002374_450

Information

Type -
Description -
Location Contig2374: 383142-387768
Sequence    

Annotation

kegg
ID rcu:RCOM_1030770
description chlorophyll synthase, putative
nr
ID XP_012078248.1
description PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
swissprot
ID Q9MBA1
description Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1
trembl
ID A0A067KKL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12097 PE=4 SV=1
Gene Ontology
ID GO:0009706
description chlorophyllide a chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24910: 383160-387748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_450 0.0 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
2 Hb_001348_090 0.0904832445 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
3 Hb_000414_080 0.0946631747 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
4 Hb_000441_050 0.0959499811 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
5 Hb_004242_170 0.0969100036 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
6 Hb_002044_160 0.097428963 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
7 Hb_000951_120 0.0989885295 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
8 Hb_003752_090 0.1002500399 - - chitinase, putative [Ricinus communis]
9 Hb_032631_070 0.1006961397 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
10 Hb_158092_100 0.1010750173 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
11 Hb_002005_040 0.1011563936 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_005181_120 0.1013526264 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000108_150 0.1026284107 - - alpha/beta hydrolase, putative [Ricinus communis]
14 Hb_000516_080 0.1039743895 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
15 Hb_007904_060 0.1063954031 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
16 Hb_022425_050 0.1065393276 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
17 Hb_004223_270 0.1072096563 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
18 Hb_024677_010 0.1086181923 - - superoxide dismutase [fe], putative [Ricinus communis]
19 Hb_000579_040 0.1087957996 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
20 Hb_000005_100 0.1088224535 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002374_450 Hb_002374_450 Hb_001348_090 Hb_001348_090 Hb_002374_450--Hb_001348_090 Hb_000414_080 Hb_000414_080 Hb_002374_450--Hb_000414_080 Hb_000441_050 Hb_000441_050 Hb_002374_450--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_002374_450--Hb_004242_170 Hb_002044_160 Hb_002044_160 Hb_002374_450--Hb_002044_160 Hb_000951_120 Hb_000951_120 Hb_002374_450--Hb_000951_120 Hb_002005_040 Hb_002005_040 Hb_001348_090--Hb_002005_040 Hb_004055_160 Hb_004055_160 Hb_001348_090--Hb_004055_160 Hb_001348_090--Hb_004242_170 Hb_024677_010 Hb_024677_010 Hb_001348_090--Hb_024677_010 Hb_001348_090--Hb_000441_050 Hb_000487_370 Hb_000487_370 Hb_000414_080--Hb_000487_370 Hb_000510_190 Hb_000510_190 Hb_000414_080--Hb_000510_190 Hb_002249_080 Hb_002249_080 Hb_000414_080--Hb_002249_080 Hb_000422_080 Hb_000422_080 Hb_000414_080--Hb_000422_080 Hb_003175_070 Hb_003175_070 Hb_000414_080--Hb_003175_070 Hb_005977_060 Hb_005977_060 Hb_000441_050--Hb_005977_060 Hb_000441_050--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_000441_050--Hb_001053_020 Hb_001365_020 Hb_001365_020 Hb_000441_050--Hb_001365_020 Hb_005276_070 Hb_005276_070 Hb_000441_050--Hb_005276_070 Hb_004242_170--Hb_001053_020 Hb_000108_150 Hb_000108_150 Hb_004242_170--Hb_000108_150 Hb_004242_170--Hb_005977_060 Hb_009692_040 Hb_009692_040 Hb_004242_170--Hb_009692_040 Hb_158092_100 Hb_158092_100 Hb_002044_160--Hb_158092_100 Hb_000454_100 Hb_000454_100 Hb_002044_160--Hb_000454_100 Hb_002044_160--Hb_002005_040 Hb_000579_040 Hb_000579_040 Hb_002044_160--Hb_000579_040 Hb_002044_160--Hb_004055_160 Hb_032631_070 Hb_032631_070 Hb_000951_120--Hb_032631_070 Hb_002075_030 Hb_002075_030 Hb_000951_120--Hb_002075_030 Hb_000951_120--Hb_158092_100 Hb_001649_030 Hb_001649_030 Hb_000951_120--Hb_001649_030 Hb_003752_090 Hb_003752_090 Hb_000951_120--Hb_003752_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.9308 8.70133 27.7084 22.0064 2.02277 4.94783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90126 3.64733 3.26042 9.00956 40.7796

CAGE analysis