Hb_001365_020

Information

Type -
Description -
Location Contig1365: 43104-54202
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa000927mg
description hypothetical protein
nr
ID XP_007210394.1
description hypothetical protein PRUPE_ppa000927mg [Prunus persica]
swissprot
ID Q9FN05
description Probable glucan 1,3-alpha-glucosidase OS=Arabidopsis thaliana GN=PSL5 PE=1 SV=1
trembl
ID M5WQJ8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000927mg PE=3 SV=1
Gene Ontology
ID GO:0009507
description neutral alpha-glucosidase c-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10049: 18075-74100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001365_020 0.0 - - hypothetical protein PRUPE_ppa000927mg [Prunus persica]
2 Hb_001365_010 0.0875499912 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
3 Hb_000441_050 0.0938603411 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
4 Hb_003053_070 0.0992777563 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
5 Hb_005977_060 0.1003060616 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000163_110 0.1006418092 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
7 Hb_005276_070 0.1053856469 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
8 Hb_001360_030 0.1108914036 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
9 Hb_001365_030 0.1141635199 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
10 Hb_010632_010 0.1230433247 - - PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial [Jatropha curcas]
11 Hb_010632_020 0.1235098707 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
12 Hb_024677_010 0.1322766143 - - superoxide dismutase [fe], putative [Ricinus communis]
13 Hb_035834_010 0.1334346078 - - zinc finger protein, putative [Ricinus communis]
14 Hb_112064_010 0.1334695969 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
15 Hb_000516_080 0.1335240928 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
16 Hb_001053_020 0.1345465472 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
17 Hb_002811_190 0.1357533014 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
18 Hb_002374_450 0.1374900422 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
19 Hb_004242_170 0.1381199807 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
20 Hb_000329_080 0.1398866077 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001365_020 Hb_001365_020 Hb_001365_010 Hb_001365_010 Hb_001365_020--Hb_001365_010 Hb_000441_050 Hb_000441_050 Hb_001365_020--Hb_000441_050 Hb_003053_070 Hb_003053_070 Hb_001365_020--Hb_003053_070 Hb_005977_060 Hb_005977_060 Hb_001365_020--Hb_005977_060 Hb_000163_110 Hb_000163_110 Hb_001365_020--Hb_000163_110 Hb_005276_070 Hb_005276_070 Hb_001365_020--Hb_005276_070 Hb_000329_080 Hb_000329_080 Hb_001365_010--Hb_000329_080 Hb_001365_010--Hb_000163_110 Hb_001365_010--Hb_000441_050 Hb_003783_050 Hb_003783_050 Hb_001365_010--Hb_003783_050 Hb_035834_010 Hb_035834_010 Hb_001365_010--Hb_035834_010 Hb_000441_050--Hb_005977_060 Hb_004242_170 Hb_004242_170 Hb_000441_050--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_000441_050--Hb_001053_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_000441_050--Hb_005276_070 Hb_004837_100 Hb_004837_100 Hb_003053_070--Hb_004837_100 Hb_000684_200 Hb_000684_200 Hb_003053_070--Hb_000684_200 Hb_004162_270 Hb_004162_270 Hb_003053_070--Hb_004162_270 Hb_000516_080 Hb_000516_080 Hb_003053_070--Hb_000516_080 Hb_001365_030 Hb_001365_030 Hb_003053_070--Hb_001365_030 Hb_005977_060--Hb_005276_070 Hb_005977_060--Hb_004242_170 Hb_009692_040 Hb_009692_040 Hb_005977_060--Hb_009692_040 Hb_005977_060--Hb_001053_020 Hb_000163_110--Hb_000329_080 Hb_000163_110--Hb_000441_050 Hb_000163_110--Hb_005977_060 Hb_000300_680 Hb_000300_680 Hb_000163_110--Hb_000300_680 Hb_002662_110 Hb_002662_110 Hb_005276_070--Hb_002662_110 Hb_005276_070--Hb_003053_070 Hb_010632_020 Hb_010632_020 Hb_005276_070--Hb_010632_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.559373 3.77144 15.2465 10.2478 1.44703 2.18213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05322 0.715429 2.01582 9.03032 24.7288

CAGE analysis