Hb_003053_070

Information

Type -
Description -
Location Contig3053: 103545-109229
Sequence    

Annotation

kegg
ID vvi:100252584
description phosphoglucan phosphatase LSF1, chloroplastic
nr
ID XP_012081508.1
description PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
swissprot
ID F4J117
description Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis thaliana GN=LSF1 PE=1 SV=1
trembl
ID A0A067LDN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09587 PE=4 SV=1
Gene Ontology
ID GO:0005515
description phosphoglucan phosphatase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32215: 103644-109144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003053_070 0.0 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
2 Hb_004837_100 0.0933955907 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
3 Hb_001365_020 0.0992777563 - - hypothetical protein PRUPE_ppa000927mg [Prunus persica]
4 Hb_000684_200 0.1002867901 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_004162_270 0.1025571619 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000516_080 0.1088399687 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
7 Hb_001365_030 0.1092650894 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
8 Hb_010632_020 0.110797387 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
9 Hb_005276_070 0.1109715025 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
10 Hb_001863_180 0.1128487784 - - PREDICTED: serine/threonine-protein kinase SAPK2 isoform X1 [Jatropha curcas]
11 Hb_000019_080 0.1134426313 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
12 Hb_005784_030 0.1148435532 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
13 Hb_000441_050 0.1158355975 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
14 Hb_003680_090 0.1162616349 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
15 Hb_005977_060 0.1176972243 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000163_110 0.1181877222 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
17 Hb_005181_120 0.1192601511 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_010098_040 0.1194116375 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
19 Hb_002374_450 0.1216580379 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
20 Hb_000352_280 0.1218770412 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003053_070 Hb_003053_070 Hb_004837_100 Hb_004837_100 Hb_003053_070--Hb_004837_100 Hb_001365_020 Hb_001365_020 Hb_003053_070--Hb_001365_020 Hb_000684_200 Hb_000684_200 Hb_003053_070--Hb_000684_200 Hb_004162_270 Hb_004162_270 Hb_003053_070--Hb_004162_270 Hb_000516_080 Hb_000516_080 Hb_003053_070--Hb_000516_080 Hb_001365_030 Hb_001365_030 Hb_003053_070--Hb_001365_030 Hb_000019_080 Hb_000019_080 Hb_004837_100--Hb_000019_080 Hb_004837_100--Hb_000684_200 Hb_000395_010 Hb_000395_010 Hb_004837_100--Hb_000395_010 Hb_001579_280 Hb_001579_280 Hb_004837_100--Hb_001579_280 Hb_004837_100--Hb_004162_270 Hb_001365_010 Hb_001365_010 Hb_001365_020--Hb_001365_010 Hb_000441_050 Hb_000441_050 Hb_001365_020--Hb_000441_050 Hb_005977_060 Hb_005977_060 Hb_001365_020--Hb_005977_060 Hb_000163_110 Hb_000163_110 Hb_001365_020--Hb_000163_110 Hb_005276_070 Hb_005276_070 Hb_001365_020--Hb_005276_070 Hb_010557_010 Hb_010557_010 Hb_000684_200--Hb_010557_010 Hb_000684_200--Hb_004162_270 Hb_002811_250 Hb_002811_250 Hb_000684_200--Hb_002811_250 Hb_010098_040 Hb_010098_040 Hb_000684_200--Hb_010098_040 Hb_005181_120 Hb_005181_120 Hb_000684_200--Hb_005181_120 Hb_000270_280 Hb_000270_280 Hb_004162_270--Hb_000270_280 Hb_003680_090 Hb_003680_090 Hb_004162_270--Hb_003680_090 Hb_004162_270--Hb_000395_010 Hb_005784_030 Hb_005784_030 Hb_004162_270--Hb_005784_030 Hb_000516_080--Hb_005181_120 Hb_000516_080--Hb_010098_040 Hb_007982_040 Hb_007982_040 Hb_000516_080--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_000516_080--Hb_000679_080 Hb_002374_450 Hb_002374_450 Hb_000516_080--Hb_002374_450 Hb_000516_080--Hb_002811_250 Hb_010632_020 Hb_010632_020 Hb_001365_030--Hb_010632_020 Hb_007765_130 Hb_007765_130 Hb_001365_030--Hb_007765_130 Hb_000940_030 Hb_000940_030 Hb_001365_030--Hb_000940_030 Hb_001365_030--Hb_000679_080 Hb_002044_160 Hb_002044_160 Hb_001365_030--Hb_002044_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.800944 3.32329 16.8178 9.22356 0.49443 1.02985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.67303 1.31644 2.62275 6.44671 23.0908

CAGE analysis