Hb_000270_280

Information

Type -
Description -
Location Contig270: 229840-230502
Sequence    

Annotation

kegg
ID rcu:RCOM_1512950
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_002511486.1
description Rhicadhesin receptor precursor, putative [Ricinus communis]
swissprot
ID Q9LMC9
description Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1
trembl
ID B9R911
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_1512950 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily t member 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28184: 230338-230541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_280 0.0 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
2 Hb_000310_060 0.0729822352 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
3 Hb_003680_090 0.0886431206 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
4 Hb_000940_030 0.0920145899 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
5 Hb_004648_030 0.0924538976 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
6 Hb_004162_270 0.0970584333 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
7 Hb_005784_030 0.106323947 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
8 Hb_001587_040 0.1093081967 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
9 Hb_000327_200 0.1095748376 - - glutathione-s-transferase omega, putative [Ricinus communis]
10 Hb_000996_080 0.1154428155 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
11 Hb_000684_200 0.1168593377 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
12 Hb_010632_020 0.1209425763 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
13 Hb_001365_030 0.124951493 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
14 Hb_000334_050 0.1254836348 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
15 Hb_004223_270 0.1260874185 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
16 Hb_003398_040 0.1268052123 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
17 Hb_000011_560 0.1278031937 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
18 Hb_001863_180 0.127840103 - - PREDICTED: serine/threonine-protein kinase SAPK2 isoform X1 [Jatropha curcas]
19 Hb_000307_070 0.1282482983 - - protein kinase, putative [Ricinus communis]
20 Hb_003053_070 0.1284842469 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000270_280 Hb_000270_280 Hb_000310_060 Hb_000310_060 Hb_000270_280--Hb_000310_060 Hb_003680_090 Hb_003680_090 Hb_000270_280--Hb_003680_090 Hb_000940_030 Hb_000940_030 Hb_000270_280--Hb_000940_030 Hb_004648_030 Hb_004648_030 Hb_000270_280--Hb_004648_030 Hb_004162_270 Hb_004162_270 Hb_000270_280--Hb_004162_270 Hb_005784_030 Hb_005784_030 Hb_000270_280--Hb_005784_030 Hb_003398_040 Hb_003398_040 Hb_000310_060--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_000310_060--Hb_001587_040 Hb_000310_060--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000310_060--Hb_000327_200 Hb_005527_060 Hb_005527_060 Hb_000310_060--Hb_005527_060 Hb_005917_020 Hb_005917_020 Hb_003680_090--Hb_005917_020 Hb_002811_310 Hb_002811_310 Hb_003680_090--Hb_002811_310 Hb_003680_090--Hb_004162_270 Hb_001863_180 Hb_001863_180 Hb_003680_090--Hb_001863_180 Hb_003053_070 Hb_003053_070 Hb_003680_090--Hb_003053_070 Hb_010868_040 Hb_010868_040 Hb_000940_030--Hb_010868_040 Hb_003055_070 Hb_003055_070 Hb_000940_030--Hb_003055_070 Hb_000996_080 Hb_000996_080 Hb_000940_030--Hb_000996_080 Hb_001365_030 Hb_001365_030 Hb_000940_030--Hb_001365_030 Hb_004223_270 Hb_004223_270 Hb_004648_030--Hb_004223_270 Hb_000334_050 Hb_000334_050 Hb_004648_030--Hb_000334_050 Hb_004648_030--Hb_003680_090 Hb_004648_030--Hb_004162_270 Hb_004648_030--Hb_000940_030 Hb_000684_200 Hb_000684_200 Hb_004162_270--Hb_000684_200 Hb_004162_270--Hb_003053_070 Hb_000395_010 Hb_000395_010 Hb_004162_270--Hb_000395_010 Hb_004162_270--Hb_005784_030 Hb_007904_060 Hb_007904_060 Hb_005784_030--Hb_007904_060 Hb_003664_030 Hb_003664_030 Hb_005784_030--Hb_003664_030 Hb_000264_280 Hb_000264_280 Hb_005784_030--Hb_000264_280 Hb_005784_030--Hb_000684_200 Hb_003948_020 Hb_003948_020 Hb_005784_030--Hb_003948_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.294122 2.61463 12.6936 4.79111 0.610031 0.409398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92123 1.51021 0.851893 3.16405 10.7853

CAGE analysis