Hb_003055_070

Information

Type -
Description -
Location Contig3055: 45473-53473
Sequence    

Annotation

kegg
ID rcu:RCOM_1062700
description katanin P80 subunit, putative (EC:2.7.11.7)
nr
ID XP_012091535.1
description PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q8H0T9
description Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3
trembl
ID A0A067JAW7
description Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Jatropha curcas GN=JCGZ_21383 PE=3 SV=1
Gene Ontology
ID GO:0005874
description katanin p80 wd40 repeat-containing subunit b1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32243: 45745-50661 , PASA_asmbl_32244: 45745-50661 , PASA_asmbl_32246: 53903-54508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_070 0.0 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
2 Hb_000940_030 0.0944315115 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
3 Hb_007765_130 0.0953415202 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
4 Hb_000446_040 0.0970615712 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
5 Hb_000005_100 0.106302085 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
6 Hb_000093_140 0.1069545927 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
7 Hb_004223_270 0.1113899035 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
8 Hb_001365_030 0.1164448697 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
9 Hb_000635_050 0.116731641 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
10 Hb_004346_040 0.1187905822 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
11 Hb_001227_140 0.1205541744 - - PREDICTED: protein ROS1 [Jatropha curcas]
12 Hb_002432_050 0.1260940771 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
13 Hb_003175_070 0.1269758245 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
14 Hb_000594_060 0.1276187064 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
15 Hb_000227_400 0.1276827324 - - lipoxygenase, putative [Ricinus communis]
16 Hb_010868_040 0.1284235465 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
17 Hb_003020_250 0.128942624 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
18 Hb_000327_200 0.1292518998 - - glutathione-s-transferase omega, putative [Ricinus communis]
19 Hb_000181_330 0.1299966706 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
20 Hb_003915_020 0.1306480701 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003055_070 Hb_003055_070 Hb_000940_030 Hb_000940_030 Hb_003055_070--Hb_000940_030 Hb_007765_130 Hb_007765_130 Hb_003055_070--Hb_007765_130 Hb_000446_040 Hb_000446_040 Hb_003055_070--Hb_000446_040 Hb_000005_100 Hb_000005_100 Hb_003055_070--Hb_000005_100 Hb_000093_140 Hb_000093_140 Hb_003055_070--Hb_000093_140 Hb_004223_270 Hb_004223_270 Hb_003055_070--Hb_004223_270 Hb_010868_040 Hb_010868_040 Hb_000940_030--Hb_010868_040 Hb_000310_060 Hb_000310_060 Hb_000940_030--Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_000940_030--Hb_000270_280 Hb_000996_080 Hb_000996_080 Hb_000940_030--Hb_000996_080 Hb_001365_030 Hb_001365_030 Hb_000940_030--Hb_001365_030 Hb_000042_050 Hb_000042_050 Hb_007765_130--Hb_000042_050 Hb_007765_130--Hb_001365_030 Hb_007765_130--Hb_000005_100 Hb_000679_080 Hb_000679_080 Hb_007765_130--Hb_000679_080 Hb_007765_130--Hb_000093_140 Hb_000933_110 Hb_000933_110 Hb_000446_040--Hb_000933_110 Hb_005015_020 Hb_005015_020 Hb_000446_040--Hb_005015_020 Hb_000334_050 Hb_000334_050 Hb_000446_040--Hb_000334_050 Hb_004346_040 Hb_004346_040 Hb_000446_040--Hb_004346_040 Hb_004324_120 Hb_004324_120 Hb_000446_040--Hb_004324_120 Hb_000005_100--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000005_100--Hb_022425_050 Hb_000976_130 Hb_000976_130 Hb_000005_100--Hb_000976_130 Hb_001053_020 Hb_001053_020 Hb_000005_100--Hb_001053_020 Hb_000093_140--Hb_004346_040 Hb_003894_060 Hb_003894_060 Hb_000093_140--Hb_003894_060 Hb_005214_070 Hb_005214_070 Hb_000093_140--Hb_005214_070 Hb_000093_140--Hb_004324_120 Hb_004223_270--Hb_000933_110 Hb_004223_270--Hb_000334_050 Hb_004223_270--Hb_022425_050 Hb_001649_030 Hb_001649_030 Hb_004223_270--Hb_001649_030 Hb_005116_100 Hb_005116_100 Hb_004223_270--Hb_005116_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37358 10.9739 27.1755 12.4861 1.72356 1.8748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30144 1.7557 0.860765 5.84584 23.6697

CAGE analysis