Hb_005015_020

Information

Type desease resistance
Description Gene Name: ABC_tran
Location Contig5015: 8263-13814
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06620g
description POPTRDRAFT_217877; ABC transporter family protein
nr
ID AIU41644.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9LV93
description ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1
trembl
ID A0A097P9Q0
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCF5 PE=2 SV=1
Gene Ontology
ID GO:0005524
description abc transporter f family member 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45853: 8280-13713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005015_020 0.0 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
2 Hb_004324_120 0.0727905549 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
3 Hb_004346_040 0.0978094052 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
4 Hb_005288_180 0.1022091269 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_012539_040 0.1039833313 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
6 Hb_000446_040 0.1052613039 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
7 Hb_002799_130 0.1168821183 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
8 Hb_000933_110 0.1187831188 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
9 Hb_140389_010 0.1240864578 - - Ran GTPase binding protein, putative [Ricinus communis]
10 Hb_110252_010 0.1243431488 - - hypothetical protein JCGZ_16705 [Jatropha curcas]
11 Hb_000093_140 0.1261978648 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
12 Hb_000069_500 0.1313459809 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
13 Hb_005074_050 0.1345452047 - - PREDICTED: myosin-6-like [Jatropha curcas]
14 Hb_137600_010 0.1448121343 - - 50S ribosomal protein L1p, putative [Ricinus communis]
15 Hb_001250_040 0.1470830961 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
16 Hb_000556_070 0.1471388874 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
17 Hb_002928_030 0.1499920399 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
18 Hb_004223_270 0.1502106487 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
19 Hb_003055_070 0.1549373817 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
20 Hb_003683_030 0.1550549309 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005015_020 Hb_005015_020 Hb_004324_120 Hb_004324_120 Hb_005015_020--Hb_004324_120 Hb_004346_040 Hb_004346_040 Hb_005015_020--Hb_004346_040 Hb_005288_180 Hb_005288_180 Hb_005015_020--Hb_005288_180 Hb_012539_040 Hb_012539_040 Hb_005015_020--Hb_012539_040 Hb_000446_040 Hb_000446_040 Hb_005015_020--Hb_000446_040 Hb_002799_130 Hb_002799_130 Hb_005015_020--Hb_002799_130 Hb_004324_120--Hb_012539_040 Hb_004324_120--Hb_004346_040 Hb_004324_120--Hb_005288_180 Hb_137600_010 Hb_137600_010 Hb_004324_120--Hb_137600_010 Hb_004324_120--Hb_000446_040 Hb_000093_140 Hb_000093_140 Hb_004346_040--Hb_000093_140 Hb_000906_070 Hb_000906_070 Hb_004346_040--Hb_000906_070 Hb_013968_010 Hb_013968_010 Hb_004346_040--Hb_013968_010 Hb_002447_050 Hb_002447_050 Hb_004346_040--Hb_002447_050 Hb_005288_180--Hb_004346_040 Hb_001250_020 Hb_001250_020 Hb_005288_180--Hb_001250_020 Hb_003929_220 Hb_003929_220 Hb_005288_180--Hb_003929_220 Hb_002928_030 Hb_002928_030 Hb_005288_180--Hb_002928_030 Hb_012539_040--Hb_004346_040 Hb_140389_010 Hb_140389_010 Hb_012539_040--Hb_140389_010 Hb_012539_040--Hb_000093_140 Hb_000933_110 Hb_000933_110 Hb_012539_040--Hb_000933_110 Hb_003055_070 Hb_003055_070 Hb_000446_040--Hb_003055_070 Hb_000446_040--Hb_000933_110 Hb_000334_050 Hb_000334_050 Hb_000446_040--Hb_000334_050 Hb_000446_040--Hb_004346_040 Hb_002799_130--Hb_000933_110 Hb_002799_130--Hb_002928_030 Hb_003376_390 Hb_003376_390 Hb_002799_130--Hb_003376_390 Hb_002799_130--Hb_003929_220 Hb_002799_130--Hb_004324_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1643 120.83 187.131 48.9391 24.4453 19.0958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.531 9.58527 14.5987 23.1694 212.341

CAGE analysis