Hb_137600_010

Information

Type -
Description -
Location Contig137600: 3216-7289
Sequence    

Annotation

kegg
ID rcu:RCOM_0963900
description 50S ribosomal protein L1p, putative
nr
ID XP_002517771.1
description 50S ribosomal protein L1p, putative [Ricinus communis]
swissprot
ID Q9LY66
description 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1
trembl
ID B9RVK2
description Ribosomal protein OS=Ricinus communis GN=RCOM_0963900 PE=3 SV=1
Gene Ontology
ID GO:0003723
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137600_010 0.0 - - 50S ribosomal protein L1p, putative [Ricinus communis]
2 Hb_000479_210 0.0808762428 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
3 Hb_003602_030 0.1046789494 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
4 Hb_004324_120 0.1117037918 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
5 Hb_001999_260 0.1211276397 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
6 Hb_005488_190 0.1245482497 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
7 Hb_173660_010 0.1254289873 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
8 Hb_000934_260 0.1273058969 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_004208_090 0.1276524736 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
10 Hb_010721_020 0.1304020892 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
11 Hb_002107_040 0.1328535947 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
12 Hb_006583_030 0.1330953999 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
13 Hb_006681_020 0.1344835666 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
14 Hb_002485_050 0.1345097827 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
15 Hb_002811_250 0.1358763057 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
16 Hb_007982_040 0.1359203475 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_003605_060 0.1367940015 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
18 Hb_000679_080 0.1385139017 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
19 Hb_006277_080 0.1417838595 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
20 Hb_000834_060 0.142146219 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_137600_010 Hb_137600_010 Hb_000479_210 Hb_000479_210 Hb_137600_010--Hb_000479_210 Hb_003602_030 Hb_003602_030 Hb_137600_010--Hb_003602_030 Hb_004324_120 Hb_004324_120 Hb_137600_010--Hb_004324_120 Hb_001999_260 Hb_001999_260 Hb_137600_010--Hb_001999_260 Hb_005488_190 Hb_005488_190 Hb_137600_010--Hb_005488_190 Hb_173660_010 Hb_173660_010 Hb_137600_010--Hb_173660_010 Hb_000834_060 Hb_000834_060 Hb_000479_210--Hb_000834_060 Hb_003605_060 Hb_003605_060 Hb_000479_210--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_000479_210--Hb_002485_050 Hb_074548_010 Hb_074548_010 Hb_000479_210--Hb_074548_010 Hb_002811_250 Hb_002811_250 Hb_000479_210--Hb_002811_250 Hb_003602_030--Hb_000479_210 Hb_006277_080 Hb_006277_080 Hb_003602_030--Hb_006277_080 Hb_001257_110 Hb_001257_110 Hb_003602_030--Hb_001257_110 Hb_000254_120 Hb_000254_120 Hb_003602_030--Hb_000254_120 Hb_005977_040 Hb_005977_040 Hb_003602_030--Hb_005977_040 Hb_005015_020 Hb_005015_020 Hb_004324_120--Hb_005015_020 Hb_012539_040 Hb_012539_040 Hb_004324_120--Hb_012539_040 Hb_004346_040 Hb_004346_040 Hb_004324_120--Hb_004346_040 Hb_005288_180 Hb_005288_180 Hb_004324_120--Hb_005288_180 Hb_000446_040 Hb_000446_040 Hb_004324_120--Hb_000446_040 Hb_004208_090 Hb_004208_090 Hb_001999_260--Hb_004208_090 Hb_006681_020 Hb_006681_020 Hb_001999_260--Hb_006681_020 Hb_006583_030 Hb_006583_030 Hb_001999_260--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_001999_260--Hb_004117_150 Hb_005000_060 Hb_005000_060 Hb_001999_260--Hb_005000_060 Hb_000934_260 Hb_000934_260 Hb_001999_260--Hb_000934_260 Hb_007803_040 Hb_007803_040 Hb_005488_190--Hb_007803_040 Hb_005488_190--Hb_002811_250 Hb_005488_190--Hb_006681_020 Hb_009393_130 Hb_009393_130 Hb_005488_190--Hb_009393_130 Hb_002495_090 Hb_002495_090 Hb_005488_190--Hb_002495_090 Hb_000062_480 Hb_000062_480 Hb_005488_190--Hb_000062_480 Hb_173660_010--Hb_000934_260 Hb_001689_050 Hb_001689_050 Hb_173660_010--Hb_001689_050 Hb_005074_050 Hb_005074_050 Hb_173660_010--Hb_005074_050 Hb_173660_010--Hb_004208_090 Hb_110252_010 Hb_110252_010 Hb_173660_010--Hb_110252_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6098 52.7828 175.701 50.2973 20.7962 7.70715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.68152 6.19062 5.96847 10.8178 219.853

CAGE analysis