Hb_110252_010

Information

Type -
Description -
Location Contig110252: 185-1094
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02760g
description POPTRDRAFT_1088551; hypothetical protein
nr
ID KDP43418.1
description hypothetical protein JCGZ_16705 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L844
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16705 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110252_010 0.0 - - hypothetical protein JCGZ_16705 [Jatropha curcas]
2 Hb_005015_020 0.1243431488 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
3 Hb_173660_010 0.1380082345 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
4 Hb_000069_500 0.1409186054 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
5 Hb_024066_040 0.142916002 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
6 Hb_005288_180 0.1572810215 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000136_020 0.1580244791 - - PREDICTED: F-box/kelch-repeat protein At1g80440-like [Jatropha curcas]
8 Hb_004324_120 0.1608945939 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
9 Hb_137600_010 0.161252514 - - 50S ribosomal protein L1p, putative [Ricinus communis]
10 Hb_003106_240 0.1624768671 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
11 Hb_000093_140 0.1632910793 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
12 Hb_050514_020 0.1665064762 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
13 Hb_140389_010 0.1699644864 - - Ran GTPase binding protein, putative [Ricinus communis]
14 Hb_000556_070 0.1719308594 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
15 Hb_000446_040 0.1719397077 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
16 Hb_000934_260 0.173699244 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_001250_040 0.1760275799 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
18 Hb_012539_040 0.1794475447 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
19 Hb_002997_110 0.1797464704 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
20 Hb_005074_050 0.1818878873 - - PREDICTED: myosin-6-like [Jatropha curcas]

Gene co-expression network

sample Hb_110252_010 Hb_110252_010 Hb_005015_020 Hb_005015_020 Hb_110252_010--Hb_005015_020 Hb_173660_010 Hb_173660_010 Hb_110252_010--Hb_173660_010 Hb_000069_500 Hb_000069_500 Hb_110252_010--Hb_000069_500 Hb_024066_040 Hb_024066_040 Hb_110252_010--Hb_024066_040 Hb_005288_180 Hb_005288_180 Hb_110252_010--Hb_005288_180 Hb_000136_020 Hb_000136_020 Hb_110252_010--Hb_000136_020 Hb_004324_120 Hb_004324_120 Hb_005015_020--Hb_004324_120 Hb_004346_040 Hb_004346_040 Hb_005015_020--Hb_004346_040 Hb_005015_020--Hb_005288_180 Hb_012539_040 Hb_012539_040 Hb_005015_020--Hb_012539_040 Hb_000446_040 Hb_000446_040 Hb_005015_020--Hb_000446_040 Hb_002799_130 Hb_002799_130 Hb_005015_020--Hb_002799_130 Hb_000934_260 Hb_000934_260 Hb_173660_010--Hb_000934_260 Hb_137600_010 Hb_137600_010 Hb_173660_010--Hb_137600_010 Hb_001689_050 Hb_001689_050 Hb_173660_010--Hb_001689_050 Hb_005074_050 Hb_005074_050 Hb_173660_010--Hb_005074_050 Hb_004208_090 Hb_004208_090 Hb_173660_010--Hb_004208_090 Hb_000574_320 Hb_000574_320 Hb_000069_500--Hb_000574_320 Hb_001213_040 Hb_001213_040 Hb_000069_500--Hb_001213_040 Hb_000069_500--Hb_005015_020 Hb_000069_500--Hb_024066_040 Hb_000069_500--Hb_005288_180 Hb_140389_010 Hb_140389_010 Hb_000069_500--Hb_140389_010 Hb_034507_050 Hb_034507_050 Hb_024066_040--Hb_034507_050 Hb_000107_090 Hb_000107_090 Hb_024066_040--Hb_000107_090 Hb_002811_050 Hb_002811_050 Hb_024066_040--Hb_002811_050 Hb_000787_210 Hb_000787_210 Hb_024066_040--Hb_000787_210 Hb_004117_370 Hb_004117_370 Hb_024066_040--Hb_004117_370 Hb_005288_180--Hb_004346_040 Hb_005288_180--Hb_004324_120 Hb_001250_020 Hb_001250_020 Hb_005288_180--Hb_001250_020 Hb_003929_220 Hb_003929_220 Hb_005288_180--Hb_003929_220 Hb_002928_030 Hb_002928_030 Hb_005288_180--Hb_002928_030 Hb_001250_040 Hb_001250_040 Hb_000136_020--Hb_001250_040 Hb_001571_030 Hb_001571_030 Hb_000136_020--Hb_001571_030 Hb_000076_090 Hb_000076_090 Hb_000136_020--Hb_000076_090 Hb_002301_210 Hb_002301_210 Hb_000136_020--Hb_002301_210 Hb_001863_340 Hb_001863_340 Hb_000136_020--Hb_001863_340 Hb_000928_250 Hb_000928_250 Hb_000136_020--Hb_000928_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.9177 35.1667 56.7899 18.0277 3.31555 5.26019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10652 1.48108 2.26364 1.18372 58.0615

CAGE analysis