Hb_000069_500

Information

Type -
Description -
Location Contig69: 535655-540510
Sequence    

Annotation

kegg
ID pmum:103332256
description rhodanese-like domain-containing protein 4, chloroplastic
nr
ID XP_012083235.1
description PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
swissprot
ID Q9M158
description Rhodanese-like domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2
trembl
ID A0A067JX96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14278 PE=4 SV=1
Gene Ontology
ID GO:0009534
description rhodanese-like domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54251: 535793-540461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_500 0.0 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
2 Hb_000574_320 0.115262032 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
3 Hb_001213_040 0.1218506793 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
4 Hb_005015_020 0.1313459809 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
5 Hb_024066_040 0.1362814472 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
6 Hb_005288_180 0.1370507191 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_140389_010 0.1397190764 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_110252_010 0.1409186054 - - hypothetical protein JCGZ_16705 [Jatropha curcas]
9 Hb_004324_120 0.1412853895 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
10 Hb_000556_070 0.1436781796 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
11 Hb_137600_010 0.1460684567 - - 50S ribosomal protein L1p, putative [Ricinus communis]
12 Hb_006277_080 0.1540867546 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
13 Hb_000215_230 0.1571014219 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
14 Hb_012539_040 0.158763947 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
15 Hb_000992_020 0.161717165 - - monoxygenase, putative [Ricinus communis]
16 Hb_003602_030 0.1624529872 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
17 Hb_000093_140 0.1632905327 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
18 Hb_000926_070 0.1638644295 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004346_040 0.1639868134 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
20 Hb_173660_010 0.1718124452 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]

Gene co-expression network

sample Hb_000069_500 Hb_000069_500 Hb_000574_320 Hb_000574_320 Hb_000069_500--Hb_000574_320 Hb_001213_040 Hb_001213_040 Hb_000069_500--Hb_001213_040 Hb_005015_020 Hb_005015_020 Hb_000069_500--Hb_005015_020 Hb_024066_040 Hb_024066_040 Hb_000069_500--Hb_024066_040 Hb_005288_180 Hb_005288_180 Hb_000069_500--Hb_005288_180 Hb_140389_010 Hb_140389_010 Hb_000069_500--Hb_140389_010 Hb_000574_320--Hb_140389_010 Hb_011472_050 Hb_011472_050 Hb_000574_320--Hb_011472_050 Hb_006277_080 Hb_006277_080 Hb_000574_320--Hb_006277_080 Hb_000556_070 Hb_000556_070 Hb_000574_320--Hb_000556_070 Hb_002030_050 Hb_002030_050 Hb_000574_320--Hb_002030_050 Hb_000992_020 Hb_000992_020 Hb_001213_040--Hb_000992_020 Hb_034507_050 Hb_034507_050 Hb_001213_040--Hb_034507_050 Hb_001213_040--Hb_000574_320 Hb_001213_040--Hb_024066_040 Hb_000215_230 Hb_000215_230 Hb_001213_040--Hb_000215_230 Hb_004324_120 Hb_004324_120 Hb_005015_020--Hb_004324_120 Hb_004346_040 Hb_004346_040 Hb_005015_020--Hb_004346_040 Hb_005015_020--Hb_005288_180 Hb_012539_040 Hb_012539_040 Hb_005015_020--Hb_012539_040 Hb_000446_040 Hb_000446_040 Hb_005015_020--Hb_000446_040 Hb_002799_130 Hb_002799_130 Hb_005015_020--Hb_002799_130 Hb_024066_040--Hb_034507_050 Hb_000107_090 Hb_000107_090 Hb_024066_040--Hb_000107_090 Hb_002811_050 Hb_002811_050 Hb_024066_040--Hb_002811_050 Hb_000787_210 Hb_000787_210 Hb_024066_040--Hb_000787_210 Hb_004117_370 Hb_004117_370 Hb_024066_040--Hb_004117_370 Hb_005288_180--Hb_004346_040 Hb_005288_180--Hb_004324_120 Hb_001250_020 Hb_001250_020 Hb_005288_180--Hb_001250_020 Hb_003929_220 Hb_003929_220 Hb_005288_180--Hb_003929_220 Hb_002928_030 Hb_002928_030 Hb_005288_180--Hb_002928_030 Hb_140389_010--Hb_006277_080 Hb_140389_010--Hb_012539_040 Hb_140389_010--Hb_005015_020 Hb_140389_010--Hb_004324_120 Hb_140389_010--Hb_005288_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.556 69.2061 96.2472 36.4 19.0552 15.5501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30497 0.664393 1.77019 8.73785 146.249

CAGE analysis