Hb_000574_320

Information

Type -
Description -
Location Contig574: 316442-317043
Sequence    

Annotation

kegg
ID cic:CICLE_v10024937mg
description hypothetical protein
nr
ID XP_006427406.1
description hypothetical protein CICLE_v10024937mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SU32
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024937mg PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49556: 309679-322135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_320 0.0 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
2 Hb_140389_010 0.1134899566 - - Ran GTPase binding protein, putative [Ricinus communis]
3 Hb_000069_500 0.115262032 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
4 Hb_011472_050 0.1352823912 - - -
5 Hb_006277_080 0.1362649639 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
6 Hb_000556_070 0.1398409783 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
7 Hb_002030_050 0.1413857795 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
8 Hb_001405_230 0.1460352026 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
9 Hb_004242_120 0.1474439673 - - Organic cation transporter, putative [Ricinus communis]
10 Hb_000215_230 0.1511211771 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
11 Hb_000787_210 0.1516937701 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000926_070 0.1520618036 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004109_130 0.1528160801 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
14 Hb_000237_170 0.1529552343 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
15 Hb_020400_020 0.1541557751 - - starch synthase isoform II [Manihot esculenta]
16 Hb_003786_010 0.1545974403 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
17 Hb_024066_040 0.156509894 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
18 Hb_005288_180 0.1571777516 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_001213_040 0.1583061195 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
20 Hb_022693_080 0.1617109473 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_320 Hb_000574_320 Hb_140389_010 Hb_140389_010 Hb_000574_320--Hb_140389_010 Hb_000069_500 Hb_000069_500 Hb_000574_320--Hb_000069_500 Hb_011472_050 Hb_011472_050 Hb_000574_320--Hb_011472_050 Hb_006277_080 Hb_006277_080 Hb_000574_320--Hb_006277_080 Hb_000556_070 Hb_000556_070 Hb_000574_320--Hb_000556_070 Hb_002030_050 Hb_002030_050 Hb_000574_320--Hb_002030_050 Hb_140389_010--Hb_006277_080 Hb_012539_040 Hb_012539_040 Hb_140389_010--Hb_012539_040 Hb_005015_020 Hb_005015_020 Hb_140389_010--Hb_005015_020 Hb_004324_120 Hb_004324_120 Hb_140389_010--Hb_004324_120 Hb_005288_180 Hb_005288_180 Hb_140389_010--Hb_005288_180 Hb_001213_040 Hb_001213_040 Hb_000069_500--Hb_001213_040 Hb_000069_500--Hb_005015_020 Hb_024066_040 Hb_024066_040 Hb_000069_500--Hb_024066_040 Hb_000069_500--Hb_005288_180 Hb_000069_500--Hb_140389_010 Hb_010565_030 Hb_010565_030 Hb_011472_050--Hb_010565_030 Hb_005542_010 Hb_005542_010 Hb_011472_050--Hb_005542_010 Hb_067472_010 Hb_067472_010 Hb_011472_050--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_011472_050--Hb_001366_260 Hb_000173_110 Hb_000173_110 Hb_011472_050--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_011472_050--Hb_009434_060 Hb_000853_050 Hb_000853_050 Hb_006277_080--Hb_000853_050 Hb_000926_070 Hb_000926_070 Hb_006277_080--Hb_000926_070 Hb_002276_030 Hb_002276_030 Hb_006277_080--Hb_002276_030 Hb_003602_030 Hb_003602_030 Hb_006277_080--Hb_003602_030 Hb_003141_060 Hb_003141_060 Hb_006277_080--Hb_003141_060 Hb_000035_060 Hb_000035_060 Hb_000556_070--Hb_000035_060 Hb_000589_420 Hb_000589_420 Hb_000556_070--Hb_000589_420 Hb_004678_010 Hb_004678_010 Hb_000556_070--Hb_004678_010 Hb_000556_070--Hb_000069_500 Hb_001141_060 Hb_001141_060 Hb_000556_070--Hb_001141_060 Hb_004242_120 Hb_004242_120 Hb_002030_050--Hb_004242_120 Hb_002030_050--Hb_011472_050 Hb_000237_170 Hb_000237_170 Hb_002030_050--Hb_000237_170 Hb_003687_160 Hb_003687_160 Hb_002030_050--Hb_003687_160 Hb_002013_030 Hb_002013_030 Hb_002030_050--Hb_002013_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.78523 49.4019 40.2536 23.0676 6.39527 7.45625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27826 0.753394 2.47543 9.25505 105.647

CAGE analysis