Hb_003687_160

Information

Type -
Description -
Location Contig3687: 123833-129031
Sequence    

Annotation

kegg
ID rcu:RCOM_0400490
description Ran GTPase binding protein, putative
nr
ID XP_002533468.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q15751
description Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2
trembl
ID B9T5E9
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0400490 PE=4 SV=1
Gene Ontology
ID GO:0005938
description ran gtpase binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37935: 109507-124017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_160 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_000123_340 0.1258535564 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
3 Hb_004242_120 0.1341428558 - - Organic cation transporter, putative [Ricinus communis]
4 Hb_000360_010 0.1453652358 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_004109_130 0.1462029333 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
6 Hb_011649_030 0.1469424939 - - hypothetical protein [Vitis hybrid cultivar]
7 Hb_127552_050 0.1481543558 - - hypothetical protein VITISV_030752 [Vitis vinifera]
8 Hb_001385_070 0.1486918444 - - hypothetical protein VITISV_019194 [Vitis vinifera]
9 Hb_003291_030 0.1500282157 - - Gag-pol protein, putative [Solanum demissum]
10 Hb_006940_020 0.1522882402 - - polyprotein [Oryza australiensis]
11 Hb_000173_110 0.1537249947 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
12 Hb_000574_330 0.1546405341 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_002030_050 0.1550472161 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
14 Hb_007201_010 0.1570841933 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
15 Hb_000254_120 0.1607248259 - - conserved hypothetical protein [Ricinus communis]
16 Hb_168031_020 0.1631724255 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
17 Hb_000574_040 0.1688176604 - - PREDICTED: triphosphate tunel metalloenzyme 3-like isoform X1 [Jatropha curcas]
18 Hb_004374_090 0.1702461837 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
19 Hb_011900_020 0.1709678116 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
20 Hb_001377_060 0.1712467914 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003687_160 Hb_003687_160 Hb_000123_340 Hb_000123_340 Hb_003687_160--Hb_000123_340 Hb_004242_120 Hb_004242_120 Hb_003687_160--Hb_004242_120 Hb_000360_010 Hb_000360_010 Hb_003687_160--Hb_000360_010 Hb_004109_130 Hb_004109_130 Hb_003687_160--Hb_004109_130 Hb_011649_030 Hb_011649_030 Hb_003687_160--Hb_011649_030 Hb_127552_050 Hb_127552_050 Hb_003687_160--Hb_127552_050 Hb_001385_070 Hb_001385_070 Hb_000123_340--Hb_001385_070 Hb_000173_110 Hb_000173_110 Hb_000123_340--Hb_000173_110 Hb_000820_100 Hb_000820_100 Hb_000123_340--Hb_000820_100 Hb_000123_340--Hb_127552_050 Hb_007543_020 Hb_007543_020 Hb_000123_340--Hb_007543_020 Hb_010565_030 Hb_010565_030 Hb_000123_340--Hb_010565_030 Hb_002030_050 Hb_002030_050 Hb_004242_120--Hb_002030_050 Hb_004242_120--Hb_000173_110 Hb_011472_050 Hb_011472_050 Hb_004242_120--Hb_011472_050 Hb_000574_320 Hb_000574_320 Hb_004242_120--Hb_000574_320 Hb_022693_080 Hb_022693_080 Hb_004242_120--Hb_022693_080 Hb_011900_020 Hb_011900_020 Hb_000360_010--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_000360_010--Hb_156850_020 Hb_003905_030 Hb_003905_030 Hb_000360_010--Hb_003905_030 Hb_106552_030 Hb_106552_030 Hb_000360_010--Hb_106552_030 Hb_000359_070 Hb_000359_070 Hb_000360_010--Hb_000359_070 Hb_010080_070 Hb_010080_070 Hb_000360_010--Hb_010080_070 Hb_005332_150 Hb_005332_150 Hb_004109_130--Hb_005332_150 Hb_000966_040 Hb_000966_040 Hb_004109_130--Hb_000966_040 Hb_020400_020 Hb_020400_020 Hb_004109_130--Hb_020400_020 Hb_065525_070 Hb_065525_070 Hb_004109_130--Hb_065525_070 Hb_000084_140 Hb_000084_140 Hb_004109_130--Hb_000084_140 Hb_000208_270 Hb_000208_270 Hb_004109_130--Hb_000208_270 Hb_000352_060 Hb_000352_060 Hb_011649_030--Hb_000352_060 Hb_003291_030 Hb_003291_030 Hb_011649_030--Hb_003291_030 Hb_011649_030--Hb_001385_070 Hb_011649_030--Hb_127552_050 Hb_041813_040 Hb_041813_040 Hb_011649_030--Hb_041813_040 Hb_000574_330 Hb_000574_330 Hb_011649_030--Hb_000574_330 Hb_127552_050--Hb_001385_070 Hb_127552_050--Hb_000574_330 Hb_127552_050--Hb_041813_040 Hb_004520_010 Hb_004520_010 Hb_127552_050--Hb_004520_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225087 1.38587 1.15992 0.598399 0.185832 0.308671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.236813 0.175394 0.0209828 0.612914 8.28528

CAGE analysis