Hb_000208_270

Information

Type -
Description -
Location Contig208: 355967-361012
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03160g
description POPTRDRAFT_820232; hypothetical protein
nr
ID XP_012090528.1
description PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
swissprot
ID O48902
description Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1
trembl
ID A0A067L9D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01576 PE=3 SV=1
Gene Ontology
ID GO:0005739
description malate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21504: 355935-361011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000208_270 0.0 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
2 Hb_020141_030 0.0850743713 - - solanesyl diphosphate synthase, putative [Ricinus communis]
3 Hb_010098_040 0.1021097838 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
4 Hb_000787_210 0.1033964992 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000538_300 0.1076601649 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
6 Hb_000966_040 0.108973507 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
7 Hb_002814_010 0.1103795909 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
8 Hb_007982_040 0.1133004882 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
9 Hb_000359_160 0.1141119888 - - PREDICTED: protein CAJ1 [Jatropha curcas]
10 Hb_001252_030 0.1196082975 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
11 Hb_000002_300 0.1196357516 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
12 Hb_000723_320 0.1234244916 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
13 Hb_002811_050 0.1237742383 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
14 Hb_001053_020 0.1245969605 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
15 Hb_000056_110 0.1269159978 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
16 Hb_005181_120 0.1273208236 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000679_080 0.1275940629 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
18 Hb_020400_020 0.1289622212 - - starch synthase isoform II [Manihot esculenta]
19 Hb_010721_020 0.1294414854 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
20 Hb_000975_050 0.1315992415 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000208_270 Hb_000208_270 Hb_020141_030 Hb_020141_030 Hb_000208_270--Hb_020141_030 Hb_010098_040 Hb_010098_040 Hb_000208_270--Hb_010098_040 Hb_000787_210 Hb_000787_210 Hb_000208_270--Hb_000787_210 Hb_000538_300 Hb_000538_300 Hb_000208_270--Hb_000538_300 Hb_000966_040 Hb_000966_040 Hb_000208_270--Hb_000966_040 Hb_002814_010 Hb_002814_010 Hb_000208_270--Hb_002814_010 Hb_020141_030--Hb_000787_210 Hb_001541_280 Hb_001541_280 Hb_020141_030--Hb_001541_280 Hb_003018_150 Hb_003018_150 Hb_020141_030--Hb_003018_150 Hb_020141_030--Hb_002814_010 Hb_003058_170 Hb_003058_170 Hb_020141_030--Hb_003058_170 Hb_005181_120 Hb_005181_120 Hb_010098_040--Hb_005181_120 Hb_002811_250 Hb_002811_250 Hb_010098_040--Hb_002811_250 Hb_000516_080 Hb_000516_080 Hb_010098_040--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_010098_040--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_010098_040--Hb_000679_080 Hb_000684_200 Hb_000684_200 Hb_010098_040--Hb_000684_200 Hb_000103_230 Hb_000103_230 Hb_000787_210--Hb_000103_230 Hb_000056_110 Hb_000056_110 Hb_000787_210--Hb_000056_110 Hb_034507_050 Hb_034507_050 Hb_000787_210--Hb_034507_050 Hb_001252_030 Hb_001252_030 Hb_000787_210--Hb_001252_030 Hb_020400_020 Hb_020400_020 Hb_000538_300--Hb_020400_020 Hb_003688_140 Hb_003688_140 Hb_000538_300--Hb_003688_140 Hb_000538_300--Hb_000787_210 Hb_001969_130 Hb_001969_130 Hb_000538_300--Hb_001969_130 Hb_000084_140 Hb_000084_140 Hb_000538_300--Hb_000084_140 Hb_000975_050 Hb_000975_050 Hb_000966_040--Hb_000975_050 Hb_004712_200 Hb_004712_200 Hb_000966_040--Hb_004712_200 Hb_000193_220 Hb_000193_220 Hb_000966_040--Hb_000193_220 Hb_000966_040--Hb_010098_040 Hb_004109_130 Hb_004109_130 Hb_000966_040--Hb_004109_130 Hb_002814_010--Hb_001541_280 Hb_004934_130 Hb_004934_130 Hb_002814_010--Hb_004934_130 Hb_000679_320 Hb_000679_320 Hb_002814_010--Hb_000679_320 Hb_000359_160 Hb_000359_160 Hb_002814_010--Hb_000359_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.10618 51.6099 102.865 101.588 8.53355 14.9036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.16243 9.40835 5.95558 22.1722 291.479

CAGE analysis