Hb_000103_230

Information

Type -
Description -
Location Contig103: 200146-201875
Sequence    

Annotation

kegg
ID rcu:RCOM_0911110
description Chlorophyllase-2, chloroplast precursor, putative (EC:3.1.1.14)
nr
ID XP_012069695.1
description PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
swissprot
ID Q9M7I7
description Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1
trembl
ID A0A067KVU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02225 PE=4 SV=1
Gene Ontology
ID GO:0047746
description chlorophyllase- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01204: 200216-201542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_230 0.0 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
2 Hb_000787_210 0.081131258 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001252_030 0.1097463767 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
4 Hb_020141_030 0.1168405514 - - solanesyl diphosphate synthase, putative [Ricinus communis]
5 Hb_000130_140 0.1195849 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639203 isoform X1 [Jatropha curcas]
6 Hb_000237_170 0.1206137455 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
7 Hb_000208_270 0.1316067972 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
8 Hb_002636_070 0.1323665823 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
9 Hb_016924_010 0.1327627607 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000270_640 0.1334923213 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
11 Hb_000002_300 0.1340822707 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
12 Hb_000926_070 0.1348840233 - - conserved hypothetical protein [Ricinus communis]
13 Hb_022693_080 0.1356891469 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
14 Hb_034507_050 0.1368301379 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
15 Hb_093077_010 0.1368387038 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
16 Hb_000917_200 0.1387828936 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
17 Hb_003145_010 0.1416303368 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
18 Hb_003141_060 0.1428429741 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
19 Hb_001053_020 0.1436122041 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
20 Hb_000056_110 0.1439373427 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_230 Hb_000103_230 Hb_000787_210 Hb_000787_210 Hb_000103_230--Hb_000787_210 Hb_001252_030 Hb_001252_030 Hb_000103_230--Hb_001252_030 Hb_020141_030 Hb_020141_030 Hb_000103_230--Hb_020141_030 Hb_000130_140 Hb_000130_140 Hb_000103_230--Hb_000130_140 Hb_000237_170 Hb_000237_170 Hb_000103_230--Hb_000237_170 Hb_000208_270 Hb_000208_270 Hb_000103_230--Hb_000208_270 Hb_000787_210--Hb_020141_030 Hb_000056_110 Hb_000056_110 Hb_000787_210--Hb_000056_110 Hb_000787_210--Hb_000208_270 Hb_034507_050 Hb_034507_050 Hb_000787_210--Hb_034507_050 Hb_000787_210--Hb_001252_030 Hb_001053_020 Hb_001053_020 Hb_001252_030--Hb_001053_020 Hb_003849_070 Hb_003849_070 Hb_001252_030--Hb_003849_070 Hb_001252_030--Hb_020141_030 Hb_005977_060 Hb_005977_060 Hb_001252_030--Hb_005977_060 Hb_020141_030--Hb_000208_270 Hb_001541_280 Hb_001541_280 Hb_020141_030--Hb_001541_280 Hb_003018_150 Hb_003018_150 Hb_020141_030--Hb_003018_150 Hb_002814_010 Hb_002814_010 Hb_020141_030--Hb_002814_010 Hb_003058_170 Hb_003058_170 Hb_020141_030--Hb_003058_170 Hb_000392_210 Hb_000392_210 Hb_000130_140--Hb_000392_210 Hb_000083_080 Hb_000083_080 Hb_000130_140--Hb_000083_080 Hb_016924_010 Hb_016924_010 Hb_000130_140--Hb_016924_010 Hb_001100_070 Hb_001100_070 Hb_000130_140--Hb_001100_070 Hb_000627_050 Hb_000627_050 Hb_000130_140--Hb_000627_050 Hb_001468_040 Hb_001468_040 Hb_000237_170--Hb_001468_040 Hb_000753_150 Hb_000753_150 Hb_000237_170--Hb_000753_150 Hb_000237_160 Hb_000237_160 Hb_000237_170--Hb_000237_160 Hb_022693_080 Hb_022693_080 Hb_000237_170--Hb_022693_080 Hb_011472_050 Hb_011472_050 Hb_000237_170--Hb_011472_050 Hb_010098_040 Hb_010098_040 Hb_000208_270--Hb_010098_040 Hb_000538_300 Hb_000538_300 Hb_000208_270--Hb_000538_300 Hb_000966_040 Hb_000966_040 Hb_000208_270--Hb_000966_040 Hb_000208_270--Hb_002814_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.290653 6.71654 11.568 10.5903 0.961089 1.46592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.300471 0.135055 0 3.39795 23.624

CAGE analysis