Hb_003849_070

Information

Type -
Description -
Location Contig3849: 37606-43760
Sequence    

Annotation

kegg
ID rcu:RCOM_0794100
description alpha-galactosidase/alpha-n-acetylgalactosaminidase, putative (EC:3.2.1.22)
nr
ID XP_012085518.1
description PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
swissprot
ID Q9URZ0
description Alpha-galactosidase mel1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mel1 PE=3 SV=1
trembl
ID A0A067JS15
description Alpha-galactosidase OS=Jatropha curcas GN=JCGZ_17840 PE=3 SV=1
Gene Ontology
ID GO:0003824
description alpha-galactosidase alpha-n-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38749: 37648-43638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_070 0.0 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
2 Hb_016924_010 0.1075903853 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000005_370 0.1079914774 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
4 Hb_001252_030 0.1131714158 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
5 Hb_032631_020 0.1194275468 - - glycine-rich family protein [Populus trichocarpa]
6 Hb_001999_070 0.1223604775 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]
7 Hb_020141_030 0.1248141564 - - solanesyl diphosphate synthase, putative [Ricinus communis]
8 Hb_029223_010 0.1286510114 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
9 Hb_000612_090 0.1312334467 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
10 Hb_002235_110 0.1321357614 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
11 Hb_001124_230 0.1348271329 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
12 Hb_003018_150 0.1369209089 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
13 Hb_005977_060 0.1375880011 - - conserved hypothetical protein [Ricinus communis]
14 Hb_030827_010 0.1410421221 transcription factor TF Family: HB Homeobox-leucine zipper ROC6 [Gossypium arboreum]
15 Hb_003058_170 0.1428575631 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
16 Hb_000847_030 0.1437424475 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
17 Hb_000618_110 0.1439201712 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
18 Hb_002814_010 0.1441852227 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
19 Hb_010620_030 0.1467558131 - - beta-amyrin synthase [Euphorbia tirucalli]
20 Hb_002662_110 0.1468991522 - - Kinesin heavy chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_003849_070 Hb_003849_070 Hb_016924_010 Hb_016924_010 Hb_003849_070--Hb_016924_010 Hb_000005_370 Hb_000005_370 Hb_003849_070--Hb_000005_370 Hb_001252_030 Hb_001252_030 Hb_003849_070--Hb_001252_030 Hb_032631_020 Hb_032631_020 Hb_003849_070--Hb_032631_020 Hb_001999_070 Hb_001999_070 Hb_003849_070--Hb_001999_070 Hb_020141_030 Hb_020141_030 Hb_003849_070--Hb_020141_030 Hb_029223_010 Hb_029223_010 Hb_016924_010--Hb_029223_010 Hb_003195_080 Hb_003195_080 Hb_016924_010--Hb_003195_080 Hb_000270_640 Hb_000270_640 Hb_016924_010--Hb_000270_640 Hb_003145_010 Hb_003145_010 Hb_016924_010--Hb_003145_010 Hb_030827_010 Hb_030827_010 Hb_016924_010--Hb_030827_010 Hb_069696_020 Hb_069696_020 Hb_016924_010--Hb_069696_020 Hb_003929_240 Hb_003929_240 Hb_000005_370--Hb_003929_240 Hb_001474_060 Hb_001474_060 Hb_000005_370--Hb_001474_060 Hb_001124_230 Hb_001124_230 Hb_000005_370--Hb_001124_230 Hb_001832_170 Hb_001832_170 Hb_000005_370--Hb_001832_170 Hb_001257_050 Hb_001257_050 Hb_000005_370--Hb_001257_050 Hb_001053_020 Hb_001053_020 Hb_001252_030--Hb_001053_020 Hb_000103_230 Hb_000103_230 Hb_001252_030--Hb_000103_230 Hb_001252_030--Hb_020141_030 Hb_000787_210 Hb_000787_210 Hb_001252_030--Hb_000787_210 Hb_005977_060 Hb_005977_060 Hb_001252_030--Hb_005977_060 Hb_004242_170 Hb_004242_170 Hb_032631_020--Hb_004242_170 Hb_000056_110 Hb_000056_110 Hb_032631_020--Hb_000056_110 Hb_000350_030 Hb_000350_030 Hb_032631_020--Hb_000350_030 Hb_032631_020--Hb_001053_020 Hb_003207_030 Hb_003207_030 Hb_032631_020--Hb_003207_030 Hb_003018_150 Hb_003018_150 Hb_001999_070--Hb_003018_150 Hb_001210_060 Hb_001210_060 Hb_001999_070--Hb_001210_060 Hb_000847_030 Hb_000847_030 Hb_001999_070--Hb_000847_030 Hb_000076_060 Hb_000076_060 Hb_001999_070--Hb_000076_060 Hb_001999_070--Hb_003195_080 Hb_003058_170 Hb_003058_170 Hb_001999_070--Hb_003058_170 Hb_000208_270 Hb_000208_270 Hb_020141_030--Hb_000208_270 Hb_020141_030--Hb_000787_210 Hb_001541_280 Hb_001541_280 Hb_020141_030--Hb_001541_280 Hb_020141_030--Hb_003018_150 Hb_002814_010 Hb_002814_010 Hb_020141_030--Hb_002814_010 Hb_020141_030--Hb_003058_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29728 4.67392 18.8023 26.3537 2.10676 0.906527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.735836 0.579038 0.164764 7.18618 47.9325

CAGE analysis