Hb_001257_050

Information

Type -
Description -
Location Contig1257: 71486-72118
Sequence    

Annotation

kegg
ID rcu:RCOM_1282660
description hypothetical protein
nr
ID XP_012075054.1
description PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
swissprot
ID Q9SJ52
description Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1
trembl
ID B9SD02
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1282660 PE=4 SV=1
Gene Ontology
ID GO:0005737
description protein yls9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001257_050 0.0 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
2 Hb_000008_070 0.0971466918 - - kinase, putative [Ricinus communis]
3 Hb_003929_240 0.1010239342 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
4 Hb_001474_060 0.1016286144 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
5 Hb_000139_060 0.1087082265 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
6 Hb_000005_370 0.1170879055 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
7 Hb_001541_200 0.1232415675 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
8 Hb_001699_080 0.1256426351 - - unnamed protein product [Coffea canephora]
9 Hb_003018_150 0.1256916822 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
10 Hb_002246_030 0.1260588426 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_005914_160 0.1299857889 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
12 Hb_005532_030 0.131779698 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000031_180 0.1327683716 - - sarcosine oxidase, putative [Ricinus communis]
14 Hb_001557_010 0.1329888525 - - PREDICTED: extensin [Jatropha curcas]
15 Hb_000661_270 0.1344616554 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
16 Hb_001210_060 0.1350018052 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
17 Hb_010810_060 0.1356865187 - - sterol desaturase, putative [Ricinus communis]
18 Hb_001278_020 0.1368543239 - - sucrose synthase 6 [Hevea brasiliensis]
19 Hb_026549_060 0.1375477699 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
20 Hb_000083_210 0.1376231177 - - Major facilitator superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001257_050 Hb_001257_050 Hb_000008_070 Hb_000008_070 Hb_001257_050--Hb_000008_070 Hb_003929_240 Hb_003929_240 Hb_001257_050--Hb_003929_240 Hb_001474_060 Hb_001474_060 Hb_001257_050--Hb_001474_060 Hb_000139_060 Hb_000139_060 Hb_001257_050--Hb_000139_060 Hb_000005_370 Hb_000005_370 Hb_001257_050--Hb_000005_370 Hb_001541_200 Hb_001541_200 Hb_001257_050--Hb_001541_200 Hb_000008_070--Hb_000139_060 Hb_001278_020 Hb_001278_020 Hb_000008_070--Hb_001278_020 Hb_000008_070--Hb_001541_200 Hb_002246_030 Hb_002246_030 Hb_000008_070--Hb_002246_030 Hb_000008_070--Hb_001474_060 Hb_003929_240--Hb_000005_370 Hb_003018_150 Hb_003018_150 Hb_003929_240--Hb_003018_150 Hb_006750_010 Hb_006750_010 Hb_003929_240--Hb_006750_010 Hb_001699_080 Hb_001699_080 Hb_003929_240--Hb_001699_080 Hb_000103_130 Hb_000103_130 Hb_003929_240--Hb_000103_130 Hb_001474_060--Hb_000005_370 Hb_010810_060 Hb_010810_060 Hb_001474_060--Hb_010810_060 Hb_005730_060 Hb_005730_060 Hb_001474_060--Hb_005730_060 Hb_019654_180 Hb_019654_180 Hb_001474_060--Hb_019654_180 Hb_008226_010 Hb_008226_010 Hb_000139_060--Hb_008226_010 Hb_000139_060--Hb_001541_200 Hb_001557_010 Hb_001557_010 Hb_000139_060--Hb_001557_010 Hb_005066_040 Hb_005066_040 Hb_000139_060--Hb_005066_040 Hb_001657_020 Hb_001657_020 Hb_000139_060--Hb_001657_020 Hb_003849_070 Hb_003849_070 Hb_000005_370--Hb_003849_070 Hb_001124_230 Hb_001124_230 Hb_000005_370--Hb_001124_230 Hb_001832_170 Hb_001832_170 Hb_000005_370--Hb_001832_170 Hb_001541_200--Hb_001657_020 Hb_026549_060 Hb_026549_060 Hb_001541_200--Hb_026549_060 Hb_020956_030 Hb_020956_030 Hb_001541_200--Hb_020956_030 Hb_001433_090 Hb_001433_090 Hb_001541_200--Hb_001433_090 Hb_005183_050 Hb_005183_050 Hb_001541_200--Hb_005183_050 Hb_003162_060 Hb_003162_060 Hb_001541_200--Hb_003162_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222834 1.38113 6.35974 11.952 0.316076 0.641961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.280009 0.366811 0 0.239958 16.8908

CAGE analysis