Hb_005730_060

Information

Type -
Description -
Location Contig5730: 84557-86276
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20130g
description POPTRDRAFT_657611; hypothetical protein
nr
ID XP_012069009.1
description PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
swissprot
ID Q9FZ62
description Inorganic pyrophosphatase 2 OS=Arabidopsis thaliana GN=At1g17710 PE=2 SV=1
trembl
ID A0A067L0Q7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24797 PE=4 SV=1
Gene Ontology
ID GO:0052731
description inorganic pyrophosphatase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49458: 84557-86201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005730_060 0.0 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
2 Hb_010810_060 0.0974982447 - - sterol desaturase, putative [Ricinus communis]
3 Hb_027472_060 0.1096481717 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
4 Hb_003835_080 0.1152128789 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
5 Hb_001538_080 0.1171122297 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
6 Hb_001159_230 0.1218124605 - - Kinesin heavy chain, putative [Ricinus communis]
7 Hb_000031_180 0.1271385141 - - sarcosine oxidase, putative [Ricinus communis]
8 Hb_000103_130 0.1275072276 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
9 Hb_019516_070 0.1289865932 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
10 Hb_001474_060 0.1314776845 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
11 Hb_000061_450 0.1316980959 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001541_130 0.1326809978 - - GDSL esterase/lipase [Morus notabilis]
13 Hb_004032_280 0.1343722254 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
14 Hb_002572_040 0.1350029512 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
15 Hb_005656_120 0.1362447772 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
16 Hb_149694_010 0.1366466707 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
17 Hb_000599_150 0.1369904267 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
18 Hb_143629_170 0.1382644835 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
19 Hb_005295_020 0.1406470932 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
20 Hb_007904_150 0.1408688921 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]

Gene co-expression network

sample Hb_005730_060 Hb_005730_060 Hb_010810_060 Hb_010810_060 Hb_005730_060--Hb_010810_060 Hb_027472_060 Hb_027472_060 Hb_005730_060--Hb_027472_060 Hb_003835_080 Hb_003835_080 Hb_005730_060--Hb_003835_080 Hb_001538_080 Hb_001538_080 Hb_005730_060--Hb_001538_080 Hb_001159_230 Hb_001159_230 Hb_005730_060--Hb_001159_230 Hb_000031_180 Hb_000031_180 Hb_005730_060--Hb_000031_180 Hb_010810_060--Hb_000031_180 Hb_010810_060--Hb_027472_060 Hb_001474_060 Hb_001474_060 Hb_010810_060--Hb_001474_060 Hb_000599_150 Hb_000599_150 Hb_010810_060--Hb_000599_150 Hb_001699_080 Hb_001699_080 Hb_010810_060--Hb_001699_080 Hb_004032_280 Hb_004032_280 Hb_027472_060--Hb_004032_280 Hb_027472_060--Hb_000031_180 Hb_005842_010 Hb_005842_010 Hb_027472_060--Hb_005842_010 Hb_000329_780 Hb_000329_780 Hb_027472_060--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_027472_060--Hb_002572_040 Hb_027472_060--Hb_000599_150 Hb_000012_330 Hb_000012_330 Hb_003835_080--Hb_000012_330 Hb_003835_080--Hb_002572_040 Hb_004696_010 Hb_004696_010 Hb_003835_080--Hb_004696_010 Hb_000977_020 Hb_000977_020 Hb_003835_080--Hb_000977_020 Hb_012484_050 Hb_012484_050 Hb_003835_080--Hb_012484_050 Hb_000622_050 Hb_000622_050 Hb_003835_080--Hb_000622_050 Hb_000103_130 Hb_000103_130 Hb_001538_080--Hb_000103_130 Hb_001210_060 Hb_001210_060 Hb_001538_080--Hb_001210_060 Hb_097335_010 Hb_097335_010 Hb_001538_080--Hb_097335_010 Hb_001538_080--Hb_027472_060 Hb_000235_040 Hb_000235_040 Hb_001538_080--Hb_000235_040 Hb_000878_050 Hb_000878_050 Hb_001159_230--Hb_000878_050 Hb_006002_050 Hb_006002_050 Hb_001159_230--Hb_006002_050 Hb_001095_020 Hb_001095_020 Hb_001159_230--Hb_001095_020 Hb_001159_230--Hb_004696_010 Hb_004435_020 Hb_004435_020 Hb_001159_230--Hb_004435_020 Hb_005976_110 Hb_005976_110 Hb_001159_230--Hb_005976_110 Hb_000031_180--Hb_000599_150 Hb_000031_180--Hb_000329_780 Hb_000031_180--Hb_004032_280 Hb_002119_100 Hb_002119_100 Hb_000031_180--Hb_002119_100 Hb_006831_090 Hb_006831_090 Hb_000031_180--Hb_006831_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0385269 0.519608 10.9059 19.7925 0.146938 0.174216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.792709 0.242482 0.577847 1.44508 18.4224

CAGE analysis