Hb_004696_010

Information

Type -
Description -
Location Contig4696: 7798-11382
Sequence    

Annotation

kegg
ID tcc:TCM_006897
description Serine/threonine-protein kinase isoform 1
nr
ID XP_012069940.1
description PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
swissprot
ID Q6NKZ9
description Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis thaliana GN=At4g34500 PE=2 SV=1
trembl
ID A0A067LG41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10088 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like serine threonine-protein kinase at4g34500

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44190: 7687-11323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004696_010 0.0 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
2 Hb_011918_070 0.0824257846 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
3 Hb_003580_050 0.0920299589 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
4 Hb_028008_040 0.0946137374 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003835_080 0.0948637508 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
6 Hb_001541_130 0.0954835602 - - GDSL esterase/lipase [Morus notabilis]
7 Hb_001159_230 0.0964273662 - - Kinesin heavy chain, putative [Ricinus communis]
8 Hb_000160_250 0.0973814561 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
9 Hb_002724_010 0.0974590072 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
10 Hb_000290_030 0.100060447 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
11 Hb_001095_020 0.1012512106 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
12 Hb_005542_120 0.1014330051 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
13 Hb_000878_050 0.1019000603 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
14 Hb_005976_110 0.1028524745 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
15 Hb_003125_210 0.1032675163 - - Phospholipase C 4 precursor, putative [Ricinus communis]
16 Hb_012484_050 0.1056244506 - - PREDICTED: kinesin KP1 [Jatropha curcas]
17 Hb_000996_030 0.1056500317 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
18 Hb_000417_210 0.1103868438 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_002073_170 0.1105639152 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
20 Hb_000977_020 0.1139883949 - - beta-hexosaminidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004696_010 Hb_004696_010 Hb_011918_070 Hb_011918_070 Hb_004696_010--Hb_011918_070 Hb_003580_050 Hb_003580_050 Hb_004696_010--Hb_003580_050 Hb_028008_040 Hb_028008_040 Hb_004696_010--Hb_028008_040 Hb_003835_080 Hb_003835_080 Hb_004696_010--Hb_003835_080 Hb_001541_130 Hb_001541_130 Hb_004696_010--Hb_001541_130 Hb_001159_230 Hb_001159_230 Hb_004696_010--Hb_001159_230 Hb_000996_030 Hb_000996_030 Hb_011918_070--Hb_000996_030 Hb_000003_750 Hb_000003_750 Hb_011918_070--Hb_000003_750 Hb_005542_120 Hb_005542_120 Hb_011918_070--Hb_005542_120 Hb_000878_050 Hb_000878_050 Hb_011918_070--Hb_000878_050 Hb_000735_020 Hb_000735_020 Hb_011918_070--Hb_000735_020 Hb_003580_050--Hb_028008_040 Hb_000977_030 Hb_000977_030 Hb_003580_050--Hb_000977_030 Hb_003580_050--Hb_000996_030 Hb_002724_010 Hb_002724_010 Hb_003580_050--Hb_002724_010 Hb_004218_200 Hb_004218_200 Hb_003580_050--Hb_004218_200 Hb_002078_390 Hb_002078_390 Hb_028008_040--Hb_002078_390 Hb_001936_190 Hb_001936_190 Hb_028008_040--Hb_001936_190 Hb_012404_020 Hb_012404_020 Hb_028008_040--Hb_012404_020 Hb_005365_010 Hb_005365_010 Hb_028008_040--Hb_005365_010 Hb_000012_330 Hb_000012_330 Hb_003835_080--Hb_000012_330 Hb_002572_040 Hb_002572_040 Hb_003835_080--Hb_002572_040 Hb_000977_020 Hb_000977_020 Hb_003835_080--Hb_000977_020 Hb_012484_050 Hb_012484_050 Hb_003835_080--Hb_012484_050 Hb_000622_050 Hb_000622_050 Hb_003835_080--Hb_000622_050 Hb_001095_020 Hb_001095_020 Hb_001541_130--Hb_001095_020 Hb_001541_130--Hb_002572_040 Hb_111985_100 Hb_111985_100 Hb_001541_130--Hb_111985_100 Hb_002150_090 Hb_002150_090 Hb_001541_130--Hb_002150_090 Hb_007811_020 Hb_007811_020 Hb_001541_130--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_001541_130--Hb_004435_020 Hb_001159_230--Hb_000878_050 Hb_006002_050 Hb_006002_050 Hb_001159_230--Hb_006002_050 Hb_001159_230--Hb_001095_020 Hb_001159_230--Hb_004435_020 Hb_005976_110 Hb_005976_110 Hb_001159_230--Hb_005976_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125339 2.01456 9.43581 14.2121 0.0749224 0.0993484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.205363 0.0461627 0.173811 1.91495 9.82398

CAGE analysis